Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0309 ATGTCTCGAAGATCGTCTAGGTTAGTGGAAAAAGCTAAGGAATATTTAGAGAAAACCAGAATTAGTGAAATTGCAAAACCATCCAGAATGAAGAGATGTGGTGTATCGGGGGGAAACCATAAATCTTCTAGACGAAGTCAGAAGTTGAAGCAGAATAATGAGATGAAGTTGAATGAAGTTCTGTTCGAGCAATTAGAAGGGAAGAAGAGAAAGACTTGTAGTAAGAGTTCAGTGGTCACAAGAGCAGCTGCTTCAAAGAATTTCGGGTTTGAAGGGATCAAAAAAGGGGGTGGGAGATCAATGAAGAGGGTGTATTATCAAAAAGTGGTTTTTGATGGAGGTGAATTTGAGGTTGGTGACGATGTCTATGTGAAGAGGAGAGAAGATGCAAGCTCTGACGACGAAGATCGTGAAGTTGAGGAGTGCAAAGTGTGCTTTAAGTCTGGAGAGGCTATAATGATTGAGTGTGATGATTGTCTTGGTGGTTTTCATTTGGATTGTTTGAAGCCGCCTATGAAGGAGGTCCCTGAGGGAGATTGGATTTGTGGGTTTTGTGAAGCTACTAAAATGGGCAAAGAGGTTCAGTTGCCAAATCCTCCAGAAGGTAAAAAACGGGTTAGGACAATGAGGGAGAAGCTTCTGGCGGGTGACTTGTGGGCTGCTCACATTGAAAGATTATGGAAAGAAGCAAATGGTATCTATCAGTGTAAGGTTAGATGGTATATAATCCCAGAAGAGACAACAATGGGAAGGCAATCACATAACTTGAAGAGAGAGCTTTATCTAACTAATGACTATGCAGATATTGAGCACCCTCAACGAAGGGACTTGATGGTGGGGCAGAAGAACCCTGTGACCTTTGATGAGGACAAAGCTCAACCTAGAGTGGATGGCTTGAGCTTCTCTCCAAAAATCCTCAACCAACGCATCTTGCCCAGGGAAGAATCCATGAATGAGATGGAAATTCATTTCATGAGGTGTGATGAGAAGTTTGGCATGACAAATGGAACAATTAACGCTCCAAAGACCTACCAGGATTAA 1041 42.36 MSRRSSRLVEKAKEYLEKTRISEIAKPSRMKRCGVSGGNHKSSRRSQKLKQNNEMKLNEVLFEQLEGKKRKTCSKSSVVTRAAASKNFGFEGIKKGGGRSMKRVYYQKVVFDGGEFEVGDDVYVKRREDASSDDEDREVEECKVCFKSGEAIMIECDDCLGGFHLDCLKPPMKEVPEGDWICGFCEATKMGKEVQLPNPPEGKKRVRTMREKLLAGDLWAAHIERLWKEANGIYQCKVRWYIIPEETTMGRQSHNLKRELYLTNDYADIEHPQRRDLMVGQKNPVTFDEDKAQPRVDGLSFSPKILNQRILPREESMNEMEIHFMRCDEKFGMTNGTINAPKTYQD 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5014893 5017508 - Maker00032700 Lcy11g0309 646210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0309 346 ProSitePatterns Zinc finger PHD-type signature. 142 185 IPR019786 -
Lcy11g0309 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 206 IPR013083 -
Lcy11g0309 346 SMART PHD_3 141 186 IPR001965 -
Lcy11g0309 346 Gene3D - 84 273 IPR043151 -
Lcy11g0309 346 FunFam Origin recognition complex subunit 1 137 204 - -
Lcy11g0309 346 ProSiteProfiles Zinc finger PHD-type profile. 139 188 IPR019787 -
Lcy11g0309 346 SUPERFAMILY FYVE/PHD zinc finger 128 190 IPR011011 -
Lcy11g0309 346 Pfam PHD-finger 142 185 IPR019787 -
Lcy11g0309 346 PANTHER PHD FINGER PROTEIN 77 193 - -
Lcy11g0309 346 MobiDBLite consensus disorder prediction 28 53 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0309 Lcy-Chr11:5014893 Lcy6g1462 Lcy-Chr6:22415358 3.36E-175 dispersed
Lcy11g0309 Lcy-Chr11:5014893 Lcy13g0853 Lcy-Chr13:14800366 7.40E-170 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19084 None None None None Lcy TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0309 K02603 - csv:101214082 412.535