Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0316 ATGTATCTTCGAGGTCGCTCAGGGGCAGAATGTGAAACAAGGTGGTTGAATTTTGAAGACCCCCTAATTAATCGGAATCCATGGACTACAAGTGAGGACAAGAATCTTTTGTTTACCATCCAACAGAAAGGGTTGAATAACTGGATTGACATAGCAGTTTCATTGGGTACAAACAGAACTCCTTTTCAGTGCTTGTCTCGGTATCAAAGGAGTTTAAATGCTTCCATATTAAAGAGGGAGTGGACCAAAGATGAGGATGATAAACTTCGATCTGCTGTTGCTATATTTGGTGTGGGAGATTGGCAGGCAGTAGCTTCTACTTTGGAAGGACGAACCGGTCCACAGTGCTCTAATAGGTGGAAAAAATCCCTTGACCCAGCTAGGACAAAAAGAGGCTATTTCACTCCAGATGAAGACAGTCGCTTGACAATTGCGGTACTGCTTTTTGGGCCTAAAAATTGGAACAAGAAAGCAGAATTTTTACCTGGTCGAAATCAAGTTCAATGCAGAGAAAGATGGTTCAATTGTTTAGATCCTTCCTTGAGAAGATGTCAATGGACAGAAGAGGAGGATTTAAGGCTAGAGATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATGTGTGCCGTCACGAACAGATAATGAGTGCCGGAGGAGATGGAAGAAGTTATTTCCCAATGAAGTTCCTTTGCTCCAGGAAGCTAGAAAGATTCAGAAGGCTGCTCTTATTAGCAACTTTGTTGATAGGGAATCAGAGCGTCCTGCTCTTGGTCCCACTGACTTTCGGCCTCGACTGGATACAGATTTATTATGTAATACTGATGATCCAAAACCTGCCCCGAAAAGAAATGTGAAGACGAGAAGGATTCCAGTGTCAAGGAATGAAAAGAGTGCTACTGGTGATGCTCCAAAGAAGAGGAGATCAAATAACCAGAGGAATCAAGCTGATGCCACTGCTCAGGTAAGTATTGCAAATATTTCGTCTTCTGTCCCGGAGGAGGTTAAATCTATAAAACCTCAAAGAAAACGAAGTAGAAATGGAGCTCATACCACTAAGAGGAAGAAGGGAGTTCTGGAGCCACGTTCTAACAGTGAGAGACGTGTCGAACAGAATTTGGATACTCAGAGCCTCGAGGTGCAGCTGAATAGTAAGGAATCAGAGAGGACCAGCAGTGACTGCACTGAGACTGTTGATGAGAATGGTATGGAGTCGTGTGAGAACAAAGTTGCAGATAAGCTTTCTAAAAGAGATGTATGCTTTTCAGAGCAAGAAGAAAATCAAAACTCTACTGGATCTTCTGGAGTATCAGTATTGTCAGAAATGACCAATGACATGGACGAGTATAATCCCTCTATTATCCTTCCAGCAGATACAGCATTGCTGGCCAGCACTATTGGGGATGATATTATAGAAAGGAATGGGGAGAGTGTTGCAGACAAAGATCTGGATGACAGTAACAGTTTCTCGTTACCGCACAGTTGCTTAGAACTCAGGGCAACTGACAGGGAAGGTGTCAATAGCTATTCTGTGGATGAAGACACAGATAAAGGCCATGGGGTTTGCAAGTACCAAGGCAGAAGGAAGAAAGATAGTAAAACATCAAATAAGAGCCAGGATTCATTGGTTTCTAGTCGACAAGTGGAGCTGGAGAGGTCGGGGGCGAAGGAGCTTCATCGTCATAATCAATCAAAGAAGAGAAAGCATAACAGTACAAACACGACGAGTTTATTAGGAACATCGGAGACTGTTGAAGAGGTCGATGAGTGCACTCTTCTGGGCTTTTTGCAGAAAAGAGTGAAGAGGACGAACACGAGACATGACAAGAAAGTTGATGGCAGCTCTAGTTCATTAGAAGTTGATAATGATGATAATGATCCTTCCATTGCCTCGCTTCTCAAGGATAAATGTAAGAGAAAAAGGCATGAAGCGGCCAGTGGTGGAGGCTAA 1959 43.24 MYLRGRSGAECETRWLNFEDPLINRNPWTTSEDKNLLFTIQQKGLNNWIDIAVSLGTNRTPFQCLSRYQRSLNASILKREWTKDEDDKLRSAVAIFGVGDWQAVASTLEGRTGPQCSNRWKKSLDPARTKRGYFTPDEDSRLTIAVLLFGPKNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCQWTEEEDLRLEIAIQEHGYSWAKVAACVPSRTDNECRRRWKKLFPNEVPLLQEARKIQKAALISNFVDRESERPALGPTDFRPRLDTDLLCNTDDPKPAPKRNVKTRRIPVSRNEKSATGDAPKKRRSNNQRNQADATAQVSIANISSSVPEEVKSIKPQRKRSRNGAHTTKRKKGVLEPRSNSERRVEQNLDTQSLEVQLNSKESERTSSDCTETVDENGMESCENKVADKLSKRDVCFSEQEENQNSTGSSGVSVLSEMTNDMDEYNPSIILPADTALLASTIGDDIIERNGESVADKDLDDSNSFSLPHSCLELRATDREGVNSYSVDEDTDKGHGVCKYQGRRKKDSKTSNKSQDSLVSSRQVELERSGAKELHRHNQSKKRKHNSTNTTSLLGTSETVEEVDECTLLGFLQKRVKRTNTRHDKKVDGSSSSLEVDNDDNDPSIASLLKDKCKRKRHEAASGGG 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5168112 5190721 + Maker00032687 Lcy11g0316 646217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0316 652 ProSiteProfiles SANT domain profile. 76 125 IPR017884 -
Lcy11g0316 652 SMART sant 182 230 IPR001005 -
Lcy11g0316 652 SMART sant 77 126 IPR001005 -
Lcy11g0316 652 SMART sant 24 74 IPR001005 -
Lcy11g0316 652 SMART sant 130 179 IPR001005 -
Lcy11g0316 652 CDD SANT 134 175 IPR001005 -
Lcy11g0316 652 SUPERFAMILY Homeodomain-like 2 69 IPR009057 -
Lcy11g0316 652 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 178 232 IPR017930 -
Lcy11g0316 652 MobiDBLite consensus disorder prediction 511 584 - -
Lcy11g0316 652 ProSiteProfiles Myb-like domain profile. 126 177 IPR001005 -
Lcy11g0316 652 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 128 IPR017930 -
Lcy11g0316 652 Gene3D - 22 72 - -
Lcy11g0316 652 MobiDBLite consensus disorder prediction 356 376 - -
Lcy11g0316 652 Gene3D - 77 127 - -
Lcy11g0316 652 SUPERFAMILY Homeodomain-like 57 127 IPR009057 -
Lcy11g0316 652 MobiDBLite consensus disorder prediction 282 315 - -
Lcy11g0316 652 MobiDBLite consensus disorder prediction 256 406 - -
Lcy11g0316 652 Pfam Myb-like DNA-binding domain 78 122 IPR001005 -
Lcy11g0316 652 Pfam Myb-like DNA-binding domain 25 70 IPR001005 -
Lcy11g0316 652 Pfam Myb-like DNA-binding domain 183 227 IPR001005 -
Lcy11g0316 652 Pfam Myb-like DNA-binding domain 131 177 IPR001005 -
Lcy11g0316 652 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 1 647 IPR051575 GO:0000978(PANTHER)|GO:0001006(PANTHER)|GO:0019185(PANTHER)|GO:0042795(PANTHER)|GO:0042796(PANTHER)
Lcy11g0316 652 MobiDBLite consensus disorder prediction 377 391 - -
Lcy11g0316 652 MobiDBLite consensus disorder prediction 631 652 - -
Lcy11g0316 652 CDD SANT 186 228 IPR001005 -
Lcy11g0316 652 ProSiteProfiles Myb-like domain profile. 20 72 IPR001005 -
Lcy11g0316 652 MobiDBLite consensus disorder prediction 608 652 - -
Lcy11g0316 652 ProSiteProfiles Myb-like domain profile. 73 124 IPR001005 -
Lcy11g0316 652 CDD SANT 80 124 IPR001005 -
Lcy11g0316 652 ProSiteProfiles Myb-like domain profile. 178 228 IPR001005 -
Lcy11g0316 652 MobiDBLite consensus disorder prediction 316 338 - -
Lcy11g0316 652 MobiDBLite consensus disorder prediction 511 539 - -
Lcy11g0316 652 Gene3D - 128 183 - -
Lcy11g0316 652 Gene3D - 185 231 - -
Lcy11g0316 652 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 130 177 IPR017930 -
Lcy11g0316 652 SUPERFAMILY Homeodomain-like 128 224 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0316 Lcy-Chr11:5168112 Lcy2g0399 Lcy-Chr2:3340478 0 dispersed
Lcy11g0316 Lcy-Chr11:5168112 Lcy6g1483 Lcy-Chr6:23266120 7.30E-09 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19085 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0316 K09422 - csv:101216287 983.015