Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0316 ATGTATCTTCGAGGTCGCTCAGGGGCAGAATGTGAAACAAGGTGGTTGAATTTTGAAGACCCCCTAATTAATCGGAATCCATGGACTACAAGTGAGGACAAGAATCTTTTGTTTACCATCCAACAGAAAGGGTTGAATAACTGGATTGACATAGCAGTTTCATTGGGTACAAACAGAACTCCTTTTCAGTGCTTGTCTCGGTATCAAAGGAGTTTAAATGCTTCCATATTAAAGAGGGAGTGGACCAAAGATGAGGATGATAAACTTCGATCTGCTGTTGCTATATTTGGTGTGGGAGATTGGCAGGCAGTAGCTTCTACTTTGGAAGGACGAACCGGTCCACAGTGCTCTAATAGGTGGAAAAAATCCCTTGACCCAGCTAGGACAAAAAGAGGCTATTTCACTCCAGATGAAGACAGTCGCTTGACAATTGCGGTACTGCTTTTTGGGCCTAAAAATTGGAACAAGAAAGCAGAATTTTTACCTGGTCGAAATCAAGTTCAATGCAGAGAAAGATGGTTCAATTGTTTAGATCCTTCCTTGAGAAGATGTCAATGGACAGAAGAGGAGGATTTAAGGCTAGAGATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATGTGTGCCGTCACGAACAGATAATGAGTGCCGGAGGAGATGGAAGAAGTTATTTCCCAATGAAGTTCCTTTGCTCCAGGAAGCTAGAAAGATTCAGAAGGCTGCTCTTATTAGCAACTTTGTTGATAGGGAATCAGAGCGTCCTGCTCTTGGTCCCACTGACTTTCGGCCTCGACTGGATACAGATTTATTATGTAATACTGATGATCCAAAACCTGCCCCGAAAAGAAATGTGAAGACGAGAAGGATTCCAGTGTCAAGGAATGAAAAGAGTGCTACTGGTGATGCTCCAAAGAAGAGGAGATCAAATAACCAGAGGAATCAAGCTGATGCCACTGCTCAGGTAAGTATTGCAAATATTTCGTCTTCTGTCCCGGAGGAGGTTAAATCTATAAAACCTCAAAGAAAACGAAGTAGAAATGGAGCTCATACCACTAAGAGGAAGAAGGGAGTTCTGGAGCCACGTTCTAACAGTGAGAGACGTGTCGAACAGAATTTGGATACTCAGAGCCTCGAGGTGCAGCTGAATAGTAAGGAATCAGAGAGGACCAGCAGTGACTGCACTGAGACTGTTGATGAGAATGGTATGGAGTCGTGTGAGAACAAAGTTGCAGATAAGCTTTCTAAAAGAGATGTATGCTTTTCAGAGCAAGAAGAAAATCAAAACTCTACTGGATCTTCTGGAGTATCAGTATTGTCAGAAATGACCAATGACATGGACGAGTATAATCCCTCTATTATCCTTCCAGCAGATACAGCATTGCTGGCCAGCACTATTGGGGATGATATTATAGAAAGGAATGGGGAGAGTGTTGCAGACAAAGATCTGGATGACAGTAACAGTTTCTCGTTACCGCACAGTTGCTTAGAACTCAGGGCAACTGACAGGGAAGGTGTCAATAGCTATTCTGTGGATGAAGACACAGATAAAGGCCATGGGGTTTGCAAGTACCAAGGCAGAAGGAAGAAAGATAGTAAAACATCAAATAAGAGCCAGGATTCATTGGTTTCTAGTCGACAAGTGGAGCTGGAGAGGTCGGGGGCGAAGGAGCTTCATCGTCATAATCAATCAAAGAAGAGAAAGCATAACAGTACAAACACGACGAGTTTATTAGGAACATCGGAGACTGTTGAAGAGGTCGATGAGTGCACTCTTCTGGGCTTTTTGCAGAAAAGAGTGAAGAGGACGAACACGAGACATGACAAGAAAGTTGATGGCAGCTCTAGTTCATTAGAAGTTGATAATGATGATAATGATCCTTCCATTGCCTCGCTTCTCAAGGATAAATGTAAGAGAAAAAGGCATGAAGCGGCCAGTGGTGGAGGCTAA 1959 43.24 MYLRGRSGAECETRWLNFEDPLINRNPWTTSEDKNLLFTIQQKGLNNWIDIAVSLGTNRTPFQCLSRYQRSLNASILKREWTKDEDDKLRSAVAIFGVGDWQAVASTLEGRTGPQCSNRWKKSLDPARTKRGYFTPDEDSRLTIAVLLFGPKNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCQWTEEEDLRLEIAIQEHGYSWAKVAACVPSRTDNECRRRWKKLFPNEVPLLQEARKIQKAALISNFVDRESERPALGPTDFRPRLDTDLLCNTDDPKPAPKRNVKTRRIPVSRNEKSATGDAPKKRRSNNQRNQADATAQVSIANISSSVPEEVKSIKPQRKRSRNGAHTTKRKKGVLEPRSNSERRVEQNLDTQSLEVQLNSKESERTSSDCTETVDENGMESCENKVADKLSKRDVCFSEQEENQNSTGSSGVSVLSEMTNDMDEYNPSIILPADTALLASTIGDDIIERNGESVADKDLDDSNSFSLPHSCLELRATDREGVNSYSVDEDTDKGHGVCKYQGRRKKDSKTSNKSQDSLVSSRQVELERSGAKELHRHNQSKKRKHNSTNTTSLLGTSETVEEVDECTLLGFLQKRVKRTNTRHDKKVDGSSSSLEVDNDDNDPSIASLLKDKCKRKRHEAASGGG 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5168112 5190721 + Maker00032687 Lcy11g0316 646217

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0316 652 ProSiteProfiles SANT domain profile. 76 125 IPR017884 -
Lcy11g0316 652 SMART sant 182 230 IPR001005 -
Lcy11g0316 652 SMART sant 77 126 IPR001005 -
Lcy11g0316 652 SMART sant 24 74 IPR001005 -
Lcy11g0316 652 SMART sant 130 179 IPR001005 -
Lcy11g0316 652 CDD SANT 134 175 IPR001005 -
Lcy11g0316 652 SUPERFAMILY Homeodomain-like 2 69 IPR009057 -
Lcy11g0316 652 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 178 232 IPR017930 -
Lcy11g0316 652 MobiDBLite consensus disorder prediction 511 584 - -
Lcy11g0316 652 ProSiteProfiles Myb-like domain profile. 126 177 IPR001005 -
Lcy11g0316 652 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 128 IPR017930 -
Lcy11g0316 652 Gene3D - 22 72 - -
Lcy11g0316 652 MobiDBLite consensus disorder prediction 356 376 - -
Lcy11g0316 652 Gene3D - 77 127 - -
Lcy11g0316 652 SUPERFAMILY Homeodomain-like 57 127 IPR009057 -
Lcy11g0316 652 MobiDBLite consensus disorder prediction 282 315 - -
Lcy11g0316 652 MobiDBLite consensus disorder prediction 256 406 - -
Lcy11g0316 652 Pfam Myb-like DNA-binding domain 78 122 IPR001005 -
Lcy11g0316 652 Pfam Myb-like DNA-binding domain 25 70 IPR001005 -
Lcy11g0316 652 Pfam Myb-like DNA-binding domain 183 227 IPR001005 -
Lcy11g0316 652 Pfam Myb-like DNA-binding domain 131 177 IPR001005 -
Lcy11g0316 652 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 1 647 IPR051575 GO:0000978(PANTHER)|GO:0001006(PANTHER)|GO:0019185(PANTHER)|GO:0042795(PANTHER)|GO:0042796(PANTHER)
Lcy11g0316 652 MobiDBLite consensus disorder prediction 377 391 - -
Lcy11g0316 652 MobiDBLite consensus disorder prediction 631 652 - -
Lcy11g0316 652 CDD SANT 186 228 IPR001005 -
Lcy11g0316 652 ProSiteProfiles Myb-like domain profile. 20 72 IPR001005 -
Lcy11g0316 652 MobiDBLite consensus disorder prediction 608 652 - -
Lcy11g0316 652 ProSiteProfiles Myb-like domain profile. 73 124 IPR001005 -
Lcy11g0316 652 CDD SANT 80 124 IPR001005 -
Lcy11g0316 652 ProSiteProfiles Myb-like domain profile. 178 228 IPR001005 -
Lcy11g0316 652 MobiDBLite consensus disorder prediction 316 338 - -
Lcy11g0316 652 MobiDBLite consensus disorder prediction 511 539 - -
Lcy11g0316 652 Gene3D - 128 183 - -
Lcy11g0316 652 Gene3D - 185 231 - -
Lcy11g0316 652 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 130 177 IPR017930 -
Lcy11g0316 652 SUPERFAMILY Homeodomain-like 128 224 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0316 K09422 - - csv:101216287 983.015
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0316 Lcy-Chr11:5168112 Lcy2g0399 Lcy-Chr2:3340478 0 dispersed
Lcy11g0316 Lcy-Chr11:5168112 Lcy6g1483 Lcy-Chr6:23266120 7.30E-09 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy2g1629 . 1 927 MYB-Related Transcription Factor Family AT1G09770 70.1 0.0e+00 1181.0
Lcy2g0399 . 382 859 MYB-Related Transcription Factor Family AT3G18100 55.3 1.0e-151 534.6
Lcy11g0316 . 3 260 MYB-Related Transcription Factor Family AT3G18100 65.5 4.8e-101 366.3
Lcy2g0399 . 382 859 MYB-Related Transcription Factor Family AT3G18100 55.3 1.0e-151 534.6
Lcy11g0316 . 3 260 MYB-Related Transcription Factor Family AT3G18100 65.5 4.8e-101 366.3
Lcy2g1629 . 1 927 MYB-Related Transcription Factor Family AT1G09770 70.1 0.0e+00 1181.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002922 1 9 2 2 1 2 1 1 1 1 3 3 1 1 1 1 3 1 1 1 1 1 1 2 2 2 1 3 1 1 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19085 None None None None Lcy TF