Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0320 ATGGGTAGCAATAATAACATTGAGGGGTCCCCAGGGAGCTCGATGCATGGAGTGACAGGCAGAGAGCAGACGTTTGCGTTCTCTGTGGCTTCCCCAATCGTCCCAACGGACACCACTGCTAAATTCGCTCTGCCAGTGGACTCTGAGCACAAGGCGAAGGTGTTCAAGCTGTTCTCATTGGCGAACCCCCACATGAGAACCTTTCACCTCTCCTGGATCTCCTTCTTCACTTGCTTCGTTTCAACCTTCGCTGCAGCCCCTCTCGTCCCCATCATTCGGGACAACCTTAACCTCACCAAAGTCGACATTGGCAACGCTGGAGTCACCTCTGTCTCTGGCAGCATTTTCTCTCGTCTTGTCATGGGCGCTGTCTGTGACCTTCTCGGCCCTCGCTACGGCTGCGCCTTTCTCATCATGCTCTCCGCTCCCACTGTCTTCTGCATGTCCTTTGTCTCCTCTGCTGGCGGCTACATAGCCGTCAGGTTCATGATTGGATTCTCCCTTGCCACCTTCGTCTCCTGTCAGTATTGGATGAGCACCATGTTCAACAGCCAGATCATTGGCCTTGTCAATGGCACTGCTGCTGGCTGGGGCAACATGGGTGGAGGAGCCACTCAGCTCATCATGCCTTTGCTTTATGATGTTATCAAGAGAGCCGGTGCCACTCCCTTCACTGCTTGGCGGATTGCCTTCTTCATCCCTGGCTGGCTTCATATCATTATGGGCATTTTGGTTTTGACTCTTGGCCAGGATTTGCCTGATGGGAATCTTAGTAGCCTTCAGAAGAAGGGTAATGTTGCCAAAGATAAATTCTCCAATGTGCTGTGGTATGCTGTCACTAATTATAGAACTTGGATCTTTGTCCTCCTCTATGGCTACTCAATGGGGGTCGAACTTTCCACCGATAATGTGGTTGCCGAATATTTTTACGATAGGTTTGATCTAAAGCTGCACACGGCCGGAATCATCGCAGCAACATTCGGGATGGCAAATCTAGTGGCTCGACCCTTCGGAGGGTACGCTTCGGACTACGCAGCTCGATACTTCGGGATGAGAGGAAGACTGTGGACTCTATGGATCCTCCAGACGTTTGGTGGAGTGTTCTGCATGTGGCTTGGGAAAGCAAACAAACTTCCAACAGCCATAGTGGCAATGATCTTGTTCTCAATAGGAGCTCAAGCCGCATGTGGAGCCACATTCGGAATCATTCCCTTCATTTCCCGCCGCTCTTTAGGCATAATATCAGGACTAACAGGCGCAGGAGGGAACTTTGGATCTGGTCTCACTCAGTTGGTGTTCTTCTCAACCTCCAAATACACCACCGACAGAGGGTTGTTCTTGATGGGAGTAATGATCGTTTGTTGCACTCTTCCAGTCACTTTGGTTCACTTCCCTCAATGGGGCAGCATGTTCTTACCACCCACAAAACACGTTGAGAAATCTACAGAAGAATTCTACTATGGATCTGAATGGACTGAGGATGAAAAGAAGAAGGGTTTGCACCAACAAAGCATCAAGTTTGCTGAGAACAGCAGGTCCGAACGTGGTAGGCGTGTGGCCTCAGCTCCAAGTCCGCCAAACAACACTCCTTCTCATGTTTGA 1602 50.31 MGSNNNIEGSPGSSMHGVTGREQTFAFSVASPIVPTDTTAKFALPVDSEHKAKVFKLFSLANPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKVDIGNAGVTSVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFCMSFVSSAGGYIAVRFMIGFSLATFVSCQYWMSTMFNSQIIGLVNGTAAGWGNMGGGATQLIMPLLYDVIKRAGATPFTAWRIAFFIPGWLHIIMGILVLTLGQDLPDGNLSSLQKKGNVAKDKFSNVLWYAVTNYRTWIFVLLYGYSMGVELSTDNVVAEYFYDRFDLKLHTAGIIAATFGMANLVARPFGGYASDYAARYFGMRGRLWTLWILQTFGGVFCMWLGKANKLPTAIVAMILFSIGAQAACGATFGIIPFISRRSLGIISGLTGAGGNFGSGLTQLVFFSTSKYTTDRGLFLMGVMIVCCTLPVTLVHFPQWGSMFLPPTKHVEKSTEEFYYGSEWTEDEKKKGLHQQSIKFAENSRSERGRRVASAPSPPNNTPSHV 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5282798 5284800 - Maker00032775 Lcy11g0320 646221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0320 533 MobiDBLite consensus disorder prediction 496 516 - -
Lcy11g0320 533 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 10 518 IPR044772 GO:0005886(PANTHER)|GO:0015112(PANTHER)|GO:0015112(InterPro)|GO:0015706(PANTHER)|GO:0071249(PANTHER)
Lcy11g0320 533 CDD MFS_NRT2_like 68 461 IPR044772 GO:0015112(InterPro)
Lcy11g0320 533 MobiDBLite consensus disorder prediction 496 533 - -
Lcy11g0320 533 FunFam High affinity nitrate transporter 60 257 - -
Lcy11g0320 533 Pfam Major Facilitator Superfamily 72 428 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Lcy11g0320 533 SUPERFAMILY MFS general substrate transporter 62 465 IPR036259 -
Lcy11g0320 533 Gene3D MFS general substrate transporter like domains 61 257 IPR036259 -
Lcy11g0320 533 ProSiteProfiles Major facilitator superfamily (MFS) profile. 67 461 IPR020846 GO:0022857(InterPro)
Lcy11g0320 533 FunFam Nitrate transporter 2.1 268 469 - -
Lcy11g0320 533 Gene3D MFS general substrate transporter like domains 267 469 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0320 Lcy-Chr11:5282798 Lcy7g0159 Lcy-Chr7:1434741 2.16E-184 dispersed
Lcy11g0317 Lcy-Chr11:5209662 Lcy11g0320 Lcy-Chr11:5282798 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0320 K02575 - csv:101218244 1028.08