Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy11g0320 | ATGGGTAGCAATAATAACATTGAGGGGTCCCCAGGGAGCTCGATGCATGGAGTGACAGGCAGAGAGCAGACGTTTGCGTTCTCTGTGGCTTCCCCAATCGTCCCAACGGACACCACTGCTAAATTCGCTCTGCCAGTGGACTCTGAGCACAAGGCGAAGGTGTTCAAGCTGTTCTCATTGGCGAACCCCCACATGAGAACCTTTCACCTCTCCTGGATCTCCTTCTTCACTTGCTTCGTTTCAACCTTCGCTGCAGCCCCTCTCGTCCCCATCATTCGGGACAACCTTAACCTCACCAAAGTCGACATTGGCAACGCTGGAGTCACCTCTGTCTCTGGCAGCATTTTCTCTCGTCTTGTCATGGGCGCTGTCTGTGACCTTCTCGGCCCTCGCTACGGCTGCGCCTTTCTCATCATGCTCTCCGCTCCCACTGTCTTCTGCATGTCCTTTGTCTCCTCTGCTGGCGGCTACATAGCCGTCAGGTTCATGATTGGATTCTCCCTTGCCACCTTCGTCTCCTGTCAGTATTGGATGAGCACCATGTTCAACAGCCAGATCATTGGCCTTGTCAATGGCACTGCTGCTGGCTGGGGCAACATGGGTGGAGGAGCCACTCAGCTCATCATGCCTTTGCTTTATGATGTTATCAAGAGAGCCGGTGCCACTCCCTTCACTGCTTGGCGGATTGCCTTCTTCATCCCTGGCTGGCTTCATATCATTATGGGCATTTTGGTTTTGACTCTTGGCCAGGATTTGCCTGATGGGAATCTTAGTAGCCTTCAGAAGAAGGGTAATGTTGCCAAAGATAAATTCTCCAATGTGCTGTGGTATGCTGTCACTAATTATAGAACTTGGATCTTTGTCCTCCTCTATGGCTACTCAATGGGGGTCGAACTTTCCACCGATAATGTGGTTGCCGAATATTTTTACGATAGGTTTGATCTAAAGCTGCACACGGCCGGAATCATCGCAGCAACATTCGGGATGGCAAATCTAGTGGCTCGACCCTTCGGAGGGTACGCTTCGGACTACGCAGCTCGATACTTCGGGATGAGAGGAAGACTGTGGACTCTATGGATCCTCCAGACGTTTGGTGGAGTGTTCTGCATGTGGCTTGGGAAAGCAAACAAACTTCCAACAGCCATAGTGGCAATGATCTTGTTCTCAATAGGAGCTCAAGCCGCATGTGGAGCCACATTCGGAATCATTCCCTTCATTTCCCGCCGCTCTTTAGGCATAATATCAGGACTAACAGGCGCAGGAGGGAACTTTGGATCTGGTCTCACTCAGTTGGTGTTCTTCTCAACCTCCAAATACACCACCGACAGAGGGTTGTTCTTGATGGGAGTAATGATCGTTTGTTGCACTCTTCCAGTCACTTTGGTTCACTTCCCTCAATGGGGCAGCATGTTCTTACCACCCACAAAACACGTTGAGAAATCTACAGAAGAATTCTACTATGGATCTGAATGGACTGAGGATGAAAAGAAGAAGGGTTTGCACCAACAAAGCATCAAGTTTGCTGAGAACAGCAGGTCCGAACGTGGTAGGCGTGTGGCCTCAGCTCCAAGTCCGCCAAACAACACTCCTTCTCATGTTTGA | 1602 | 50.31 | MGSNNNIEGSPGSSMHGVTGREQTFAFSVASPIVPTDTTAKFALPVDSEHKAKVFKLFSLANPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKVDIGNAGVTSVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFCMSFVSSAGGYIAVRFMIGFSLATFVSCQYWMSTMFNSQIIGLVNGTAAGWGNMGGGATQLIMPLLYDVIKRAGATPFTAWRIAFFIPGWLHIIMGILVLTLGQDLPDGNLSSLQKKGNVAKDKFSNVLWYAVTNYRTWIFVLLYGYSMGVELSTDNVVAEYFYDRFDLKLHTAGIIAATFGMANLVARPFGGYASDYAARYFGMRGRLWTLWILQTFGGVFCMWLGKANKLPTAIVAMILFSIGAQAACGATFGIIPFISRRSLGIISGLTGAGGNFGSGLTQLVFFSTSKYTTDRGLFLMGVMIVCCTLPVTLVHFPQWGSMFLPPTKHVEKSTEEFYYGSEWTEDEKKKGLHQQSIKFAENSRSERGRRVASAPSPPNNTPSHV | 533 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5282798 | 5284800 | - | Maker00032775 | Lcy11g0320 | 646221 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy11g0320 | 533 | MobiDBLite | consensus disorder prediction | 496 | 516 | - | - | |
Lcy11g0320 | 533 | PANTHER | HIGH-AFFINITY NITRATE TRANSPORTER 2.3 | 10 | 518 | IPR044772 | GO:0005886(PANTHER)|GO:0015112(PANTHER)|GO:0015112(InterPro)|GO:0015706(PANTHER)|GO:0071249(PANTHER) | |
Lcy11g0320 | 533 | CDD | MFS_NRT2_like | 68 | 461 | IPR044772 | GO:0015112(InterPro) | |
Lcy11g0320 | 533 | MobiDBLite | consensus disorder prediction | 496 | 533 | - | - | |
Lcy11g0320 | 533 | FunFam | High affinity nitrate transporter | 60 | 257 | - | - | |
Lcy11g0320 | 533 | Pfam | Major Facilitator Superfamily | 72 | 428 | IPR011701 | GO:0022857(InterPro)|GO:0055085(InterPro) | |
Lcy11g0320 | 533 | SUPERFAMILY | MFS general substrate transporter | 62 | 465 | IPR036259 | - | |
Lcy11g0320 | 533 | Gene3D | MFS general substrate transporter like domains | 61 | 257 | IPR036259 | - | |
Lcy11g0320 | 533 | ProSiteProfiles | Major facilitator superfamily (MFS) profile. | 67 | 461 | IPR020846 | GO:0022857(InterPro) | |
Lcy11g0320 | 533 | FunFam | Nitrate transporter 2.1 | 268 | 469 | - | - | |
Lcy11g0320 | 533 | Gene3D | MFS general substrate transporter like domains | 267 | 469 | IPR036259 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g0320 | Lcy-Chr11:5282798 | Lcy7g0159 | Lcy-Chr7:1434741 | 2.16E-184 | dispersed | |
Lcy11g0317 | Lcy-Chr11:5209662 | Lcy11g0320 | Lcy-Chr11:5282798 | 0 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy11g0320 | K02575 | - | csv:101218244 | 1028.08 |