Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0333 ATGACCAACAACAATGGAGCAGACATTTGGGGTTTCATCGAACAAGTAGTGAAAGGACGATGGTTTGCGGTATTCGCCTCGTTTTTTATGATGATCGGCAATGGTTCAACTTACATATTCGGAACCTACTCCAAAGTTATAAAGACCCAATTCGATTACAATCAAACCCAAGTTAACACATTGGGATTCGCCAAAGATCTCGGCTCCAACATCGGAGTTTTCGCCGGCCTTCTCGCCGAGGTGGCTCCACCGTGGGTTCAATTCCTGATCGGCGCAGCTCTCAACTTTGCCGGCTACTTCATGATTTGGCTGTCCATCACTCGCCGCATCGCCAAGCCCAAATTCTGGCAAATGTTCCTTTACATTTGTGTCGGCAGTAATTCATCAAATTTCGCCAACACCGCCATTATGGTCACAGGCGTTAGAAACTTCCCCGACCGACGTGGCATTATTTTGGGCCTTCTTAAAGGCTTTGTTGGCATTGGCGGTGCCATCATAACCCAATTTCACTTAGCCTTTTACGGCCACGATGACCCATCAGATATAGTTCTTCTTTGCGCTTGGCTTCCCACAATCGTAATCCTCCTCCTTTTCCTCTCAGTTCGACCTATCAATATCCGTAAACATCCCGAAGAGCTCAAAGTCTTTTACCACTTACTTTACGTCTCCATAGTTCTGGCGCTTTTCATCTTGTTTTTGACCATAACTCAAAAACAAGTCACTTTCTCTCACGCGGGATACGTTAGTGGCGCATCCGTCATCCTTGGCTTGCTATGCCTACCCCTTCTGATCGCAGTTAGAGAAGAGTTCTTGCTCTACAAACTCAACAAACAAAACAACGGTCCATTTGTCACTGTTCCCATTGCTGAGCAAAAGCCTCCGTCGGTAACTGCCCCTGAGAAACCCATCTCCACATTGGAGGAAGTTTCAAAGATTTCGCCATCATGTTTCTCAAACATATTCAACAAGCCTCCAAGAGGGGAAGATTTCACCATCTTGCAAGCTATTTTCAGCAAAGACATGGCTCTTATTTGTCTAGCTACTTTTTCTGGATGTGGGTCATCTCTTGCGGCCATTGATAACTTAGGCCAAATTGGCGAATCACTTGGCTATCCACCACAAGCCATAAGCACGTTCGTTTCTTGGGTTTCCGTCTTCAACTTCTTCGGCCGAGTCTTCTCTGGTTTCATCTCTGAGACCATGATGGTCAAATACAAATTACCTCGTCCACTCATTTTTGCTTTTGCCTTTCTCATCACTTGCATTGGCCAGCTCTGCATCGCCTTTCCATCTCCGGGTTCGGTCTACCTAGCTTCGTTGATTATTGGGTTCGGGTTCGGAGCTCAAGTTCCATTGCTATTCGCCATAATCTCCGAGCTTTTTGGGCTCAAACATTACTCGACGTTGTTCAATTGTGGGCAATTGGTAGTCCCATTAGGGTCTTATATACTGAACGTGGATGTAGTGGGGAAGTTGTATGACGTGGAAGCTTTACGTGAAGGAACGAAACCGATGGGCACGGGGATAACTTGCACTGGAGCTCATTGCTTTAGTGGGTCGTTCACAATTTTGGCTACGGTCACAATGTTCGGAGCTGTGACTATGCTCGTGTTGGCTTATAGGACTCGAGAATTTTACAAAGAGGATGTATATAAGAAATACAGAGAGGAATTGTGGATTCCGCCATCAGAAATGGAGTTCTATCGCTTGGATACTAAGAAGAAAGTGACTAAATTCCGAACCTGA 1746 45.7 MTNNNGADIWGFIEQVVKGRWFAVFASFFMMIGNGSTYIFGTYSKVIKTQFDYNQTQVNTLGFAKDLGSNIGVFAGLLAEVAPPWVQFLIGAALNFAGYFMIWLSITRRIAKPKFWQMFLYICVGSNSSNFANTAIMVTGVRNFPDRRGIILGLLKGFVGIGGAIITQFHLAFYGHDDPSDIVLLCAWLPTIVILLLFLSVRPINIRKHPEELKVFYHLLYVSIVLALFILFLTITQKQVTFSHAGYVSGASVILGLLCLPLLIAVREEFLLYKLNKQNNGPFVTVPIAEQKPPSVTAPEKPISTLEEVSKISPSCFSNIFNKPPRGEDFTILQAIFSKDMALICLATFSGCGSSLAAIDNLGQIGESLGYPPQAISTFVSWVSVFNFFGRVFSGFISETMMVKYKLPRPLIFAFAFLITCIGQLCIAFPSPGSVYLASLIIGFGFGAQVPLLFAIISELFGLKHYSTLFNCGQLVVPLGSYILNVDVVGKLYDVEALREGTKPMGTGITCTGAHCFSGSFTILATVTMFGAVTMLVLAYRTREFYKEDVYKKYREELWIPPSEMEFYRLDTKKKVTKFRT 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5638652 5640397 + Maker00032814 Lcy11g0333 646234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0333 581 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 19 554 - GO:0016020(PANTHER)
Lcy11g0333 581 Pfam Nodulin-like 20 265 IPR010658 -
Lcy11g0333 581 CDD MFS_Mch1p_like 19 532 - -
Lcy11g0333 581 Gene3D MFS general substrate transporter like domains 17 278 IPR036259 -
Lcy11g0333 581 SUPERFAMILY MFS general substrate transporter 20 549 IPR036259 -
Lcy11g0333 581 Gene3D MFS general substrate transporter like domains 340 548 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0329 Lcy-Chr11:5535934 Lcy11g0333 Lcy-Chr11:5638652 7.91E-273 dispersed
Lcy11g0330 Lcy-Chr11:5559584 Lcy11g0333 Lcy-Chr11:5638652 1.67E-299 dispersed
Lcy11g0333 Lcy-Chr11:5638652 Lcy5g0317 Lcy-Chr5:3031968 9.87E-186 dispersed
Lcy11g0331 Lcy-Chr11:5575541 Lcy11g0333 Lcy-Chr11:5638652 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0333 - - - 0.0