Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0340 ATGATTGTATCACAAACGCCGAGCTCCAATGGCGGAATTCGGAGTGGAGAATTGGCCGGTTTTGTTCAACAACTGGTGGTGGGGCGGTGGTTTTCCCTTTTCGCTTCGTTCCTTGTAATGACCGGCGCCGGCGGAGTTTACTTGTTCGCTTATTACTCCAGAGACATCAAAACGACGCTCAAATGTGACCAAACCACGCTCAACAAGATTGGCTTTTATAAGGACCTGGGATCGAACGTCGGCGTCATCGCCGGCCTGCTGGCCGAGGTGGCGCCGACTTGGTTCGTGCTGCTCGTCGGCGCCGCCTTTAACTTTCTCGGCTACTTCAAGATATGGCAAGCCGTCACCGGAAAAATTGTGCGGCCGACTGTTGAGTTTTTTTGCTTTTACATTATGGTCGGAGCAAACTCTCAGAATTTCGCCAATACAGGTAACCTTATGGATTTTCATCAACGCCCCCATCCCATTTGTTTTTTGAGTCCTGGTGACGTGCGTGAAGAACTTCCCAGAAAGGAGAGGGGTCCTATTGGGGCTTTTAAAGGGCTTCGTGGGCCTAAGTGGGGCTATAATGACCCAACTTTACGTGGCCCTTTACGGCCATGA 603 51.08 MIVSQTPSSNGGIRSGELAGFVQQLVVGRWFSLFASFLVMTGAGGVYLFAYYSRDIKTTLKCDQTTLNKIGFYKDLGSNVGVIAGLLAEVAPTWFVLLVGAAFNFLGYFKIWQAVTGKIVRPTVEFFCFYIMVGANSQNFANTGNLMDFHQRPHPICFLSPGDVREELPRKERGPIGAFKGLRGPKWGYNDPTLRGPLRP 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5756709 5758458 + Maker00032817 Lcy11g0340 646241

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0340 200 Pfam Nodulin-like 29 147 IPR010658 -
Lcy11g0340 200 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 28 147 - GO:0016020(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0340 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0340 Lcy-Chr11:5756709 Lcy7g0626 Lcy-Chr7:5718486 4.43E-46 dispersed
Lcy11g0339 Lcy-Chr11:5749116 Lcy11g0340 Lcy-Chr11:5756709 1.98E-58 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy6g0744 . 1 729 Nodulin-like Gene Family AT4G19180 59.4 6.1e-243 837.8
Lcy9g1537 . 24 284 Nodulin-like Gene Family AT3G45870 70.5 3.2e-99 359.0
Lcy12g1833 . 11 379 Nodulin-like Gene Family AT5G47470 55.7 1.2e-104 377.5
Lcy6g2115 . 1 360 Nodulin-like Gene Family AT5G47470 55.7 7.1e-102 368.2
Lcy9g2233 . 17 274 Nodulin-like Gene Family AT3G53210 60.9 3.0e-83 305.8
Lcy13g1941 . 16 133 Nodulin-like Gene Family AT3G53210 66.9 1.4e-40 164.1
Lcy1g1424 . 78 311 Nodulin-like Gene Family AT2G37450 65.4 1.1e-82 303.9
Lcy7g0868 . 77 327 Nodulin-like Gene Family AT2G37450 52.3 9.4e-69 257.7
Lcy7g0867 . 99 332 Nodulin-like Gene Family AT2G37450 53.4 1.5e-66 250.4
Lcy7g0874 . 98 331 Nodulin-like Gene Family AT2G37450 53.4 3.3e-66 249.2
Lcy7g0870 . 98 332 Nodulin-like Gene Family AT2G37450 54.5 4.3e-66 248.8
Lcy9g1576 . 83 316 Nodulin-like Gene Family AT2G37450 54.2 6.9e-64 241.5
Lcy10g1214 . 97 334 Nodulin-like Gene Family AT2G37450 50.2 3.4e-63 239.2
Lcy10g1823 . 99 331 Nodulin-like Gene Family AT2G37450 50.9 1.0e-59 227.6
Lcy7g0869 . 3 188 Nodulin-like Gene Family AT2G37450 55.4 2.6e-55 213.0
Lcy1g1424 . 13 311 Nodulin-like Gene Family AT2G37460 66.3 2.8e-114 409.5
Lcy7g0874 . 11 353 Nodulin-like Gene Family AT2G37460 53.6 1.1e-99 360.9
Lcy7g0870 . 11 332 Nodulin-like Gene Family AT2G37460 56.5 2.5e-99 359.8
Lcy7g0867 . 11 374 Nodulin-like Gene Family AT2G37460 51.5 3.4e-96 349.4
Lcy7g0868 . 11 335 Nodulin-like Gene Family AT2G37460 51.9 4.2e-94 342.4
Lcy10g1823 . 9 331 Nodulin-like Gene Family AT2G37460 55.1 4.6e-93 339.0
Lcy5g0821 . 14 342 Nodulin-like Gene Family AT2G37460 52.4 9.9e-88 321.2
Lcy9g1576 . 14 316 Nodulin-like Gene Family AT2G37460 50.5 2.7e-85 313.2
Lcy7g0869 . 1 188 Nodulin-like Gene Family AT2G37460 56.4 4.1e-57 219.5
Lcy9g2233 . 1 389 Nodulin-like Gene Family AT1G75500 76.0 1.3e-162 570.1
Lcy2g0410 . 18 353 Nodulin-like Gene Family AT1G75500 60.5 5.7e-115 411.8
Lcy13g1941 . 1 134 Nodulin-like Gene Family AT1G75500 80.6 5.1e-55 212.6
Lcy7g0200 . 11 362 Nodulin-like Gene Family AT1G60050 51.1 4.5e-93 339.0
Lcy1g1424 . 13 311 Nodulin-like Gene Family AT5G13670 50.2 5.2e-81 298.9
Lcy7g0874 . 12 368 Nodulin-like Gene Family AT2G39510 59.1 3.1e-118 422.5
Lcy7g0870 . 12 335 Nodulin-like Gene Family AT2G39510 63.3 5.0e-116 415.2
Lcy7g0867 . 12 369 Nodulin-like Gene Family AT2G39510 56.9 6.7e-113 404.8
Lcy7g0868 . 12 348 Nodulin-like Gene Family AT2G39510 56.5 1.8e-110 396.7
Lcy10g1823 . 12 345 Nodulin-like Gene Family AT2G39510 59.2 3.8e-108 389.0
Lcy1g1424 . 13 325 Nodulin-like Gene Family AT2G39510 55.5 3.5e-101 365.9
Lcy10g1821 . 8 312 Nodulin-like Gene Family AT2G39510 55.0 7.5e-96 348.2
Lcy10g1822 . 8 325 Nodulin-like Gene Family AT2G39510 52.9 1.7e-95 347.1
Lcy7g0734 . 13 352 Nodulin-like Gene Family AT2G39510 50.4 3.2e-91 332.8
Lcy5g0821 . 16 360 Nodulin-like Gene Family AT2G39510 51.0 4.2e-91 332.4
Lcy9g1576 . 18 315 Nodulin-like Gene Family AT2G39510 52.5 1.7e-87 320.5
Lcy7g0869 . 2 198 Nodulin-like Gene Family AT2G39510 59.1 7.5e-64 241.9
Lcy10g1214 . 4 257 Nodulin-like Gene Family AT4G08290 64.3 1.1e-88 323.9
Lcy9g1576 . 12 343 Nodulin-like Gene Family AT4G08300 60.7 7.4e-112 401.4
Lcy10g1214 . 2 329 Nodulin-like Gene Family AT4G08300 51.4 1.7e-92 337.0
Lcy8g0228 . 3 257 Nodulin-like Gene Family AT5G64700 62.3 9.0e-80 294.3
Lcy4g1697 . 1 369 Nodulin-like Gene Family AT4G30420 54.2 1.3e-106 384.0
Lcy7g0734 . 6 360 Nodulin-like Gene Family AT5G07050 70.4 1.1e-142 503.8
Lcy5g0821 . 10 391 Nodulin-like Gene Family AT5G07050 61.4 1.6e-128 456.8
Lcy1g1770 . 10 381 Nodulin-like Gene Family AT5G07050 58.0 2.2e-117 419.9
Lcy5g0823 . 10 370 Nodulin-like Gene Family AT5G07050 55.6 3.4e-110 396.0
Lcy5g0821 . 12 354 Nodulin-like Gene Family AT3G56620 54.5 1.1e-102 370.9
Lcy1g1770 . 13 397 Nodulin-like Gene Family AT3G56620 51.7 2.9e-100 362.8
Lcy7g0734 . 14 347 Nodulin-like Gene Family AT3G56620 55.2 6.1e-98 355.1
Lcy7g0200 . 12 369 Nodulin-like Gene Family AT1G70260 54.3 2.4e-102 369.8
Lcy2g2366 . 3 331 Nodulin-like Gene Family AT1G09380 60.6 1.7e-108 390.2
Lcy4g1766 . 2 337 Nodulin-like Gene Family AT1G09380 55.2 5.0e-108 388.7
Lcy5g0821 . 12 353 Nodulin-like Gene Family AT2G40900 57.3 3.1e-108 389.4
Lcy1g1770 . 13 381 Nodulin-like Gene Family AT2G40900 56.1 5.1e-103 372.1
Lcy7g0734 . 14 336 Nodulin-like Gene Family AT2G40900 57.0 1.4e-100 364.0
Lcy5g0823 . 12 332 Nodulin-like Gene Family AT2G40900 51.5 3.3e-94 342.8
Lcy2g0410 . 10 371 Nodulin-like Gene Family AT3G18200 68.4 2.4e-129 459.5
Lcy9g2233 . 17 354 Nodulin-like Gene Family AT3G18200 57.7 5.1e-108 388.7
Lcy13g1941 . 16 134 Nodulin-like Gene Family AT3G18200 66.4 8.6e-39 158.7
Lcy9g1576 . 12 334 Nodulin-like Gene Family AT1G44800 61.0 1.9e-112 403.3
Lcy9g1537 . 108 378 Nodulin-like Gene Family AT5G45370 67.3 1.2e-101 367.1
Lcy9g1576 . 12 293 Nodulin-like Gene Family AT1G21890 60.9 5.9e-103 371.7
Lcy5g0821 . 12 318 Nodulin-like Gene Family AT1G21890 51.4 9.4e-85 311.2
Lcy7g0734 . 17 316 Nodulin-like Gene Family AT1G21890 50.5 1.1e-82 304.3
Lcy12g0548 . 1 584 Nodulin-like Gene Family AT1G80530 58.1 1.3e-184 643.7
Lcy6g0758 . 1 415 Nodulin-like Gene Family AT4G19450 67.5 4.8e-152 535.0
Lcy13g0549 . 22 420 Nodulin-like Gene Family AT4G19450 55.3 2.5e-121 433.0
Lcy2g0603 . 1 541 Nodulin-like Gene Family AT1G74780 59.6 3.6e-184 642.1
Lcy2g0604 . 6 518 Nodulin-like Gene Family AT1G74780 58.6 2.2e-170 596.3
Lcy2g0605 . 72 587 Nodulin-like Gene Family AT1G74780 56.9 6.7e-167 584.7
Lcy8g1243 . 9 547 Nodulin-like Gene Family AT4G34950 70.4 1.9e-220 762.7
Lcy3g0912 . 10 457 Nodulin-like Gene Family AT4G34950 55.9 1.4e-149 527.3
Lcy10g2287 . 265 883 Nodulin-like Gene Family AT5G14120 66.2 2.6e-228 788.9
Lcy8g1243 . 1 393 Nodulin-like Gene Family AT2G16660 70.6 3.8e-151 531.9
Lcy3g0912 . 4 230 Nodulin-like Gene Family AT2G16660 77.3 3.5e-96 349.4
Lcy7g0626 . 1 572 Nodulin-like Gene Family AT2G39210 71.8 2.0e-231 799.3
Lcy7g0624 . 1 588 Nodulin-like Gene Family AT2G39210 64.6 5.4e-221 764.6
Lcy10g1727 . 29 604 Nodulin-like Gene Family AT2G39210 63.0 3.7e-206 715.3
Lcy7g0623 . 9 565 Nodulin-like Gene Family AT2G39210 62.4 3.3e-202 702.2
Lcy5g0317 . 1 571 Nodulin-like Gene Family AT2G39210 60.2 2.7e-196 682.6
Lcy1g1322 . 13 572 Nodulin-like Gene Family AT2G39210 57.4 1.8e-184 643.3
Lcy11g0328 . 24 564 Nodulin-like Gene Family AT2G39210 57.8 7.6e-183 637.9
Lcy6g1296 . 1 150 Nodulin-like Gene Family AT2G39210 71.3 1.2e-63 241.9
Lcy11g0340 . 16 147 Nodulin-like Gene Family AT2G39210 58.3 1.2e-39 162.2
Lcy6g0758 . 6 413 Nodulin-like Gene Family AT3G01630 50.2 7.1e-98 355.5
Lcy10g2287 . 265 717 Nodulin-like Gene Family AT3G01930 65.4 1.8e-165 579.7
Lcy2g0603 . 7 541 Nodulin-like Gene Family AT1G18940 55.1 1.2e-168 590.5
Lcy2g0604 . 1 518 Nodulin-like Gene Family AT1G18940 53.1 1.3e-159 560.5
Lcy2g0605 . 67 589 Nodulin-like Gene Family AT1G18940 52.9 1.1e-156 550.8
Lcy2g0603 . 4 540 Nodulin-like Gene Family AT2G34350 56.1 8.4e-162 567.8
Lcy2g0604 . 7 520 Nodulin-like Gene Family AT2G34350 55.2 7.6e-155 544.7
Lcy2g0605 . 73 587 Nodulin-like Gene Family AT2G34350 53.5 2.5e-150 529.6
Lcy11g0328 . 18 567 Nodulin-like Gene Family AT2G28120 69.9 4.4e-220 761.5
Lcy7g0626 . 23 573 Nodulin-like Gene Family AT2G28120 63.0 3.7e-195 678.7
Lcy7g0624 . 23 573 Nodulin-like Gene Family AT2G28120 61.2 2.5e-191 666.0
Lcy5g0317 . 1 567 Nodulin-like Gene Family AT2G28120 59.0 9.2e-186 647.5
Lcy10g1727 . 27 592 Nodulin-like Gene Family AT2G28120 59.9 3.3e-183 639.0
Lcy7g0623 . 13 568 Nodulin-like Gene Family AT2G28120 57.3 2.5e-175 612.8
Lcy1g1322 . 9 566 Nodulin-like Gene Family AT2G28120 57.5 9.8e-172 600.9
Lcy11g0331 . 7 577 Nodulin-like Gene Family AT2G28120 54.2 2.7e-169 592.8
Lcy11g0333 . 18 576 Nodulin-like Gene Family AT2G28120 54.5 5.1e-168 588.6
Lcy11g0330 . 7 567 Nodulin-like Gene Family AT2G28120 54.1 7.3e-167 584.7
Lcy11g0329 . 9 548 Nodulin-like Gene Family AT2G28120 52.1 1.4e-157 553.9
Lcy11g0339 . 28 569 Nodulin-like Gene Family AT2G28120 52.5 6.6e-152 535.0
Lcy6g1296 . 1 150 Nodulin-like Gene Family AT2G28120 66.7 6.8e-56 216.1
Lcy11g0340 . 15 147 Nodulin-like Gene Family AT2G28120 60.9 8.6e-43 172.6
Lcy13g0549 . 10 567 Nodulin-like Gene Family AT1G31470 54.3 4.3e-159 558.9
Lcy6g0758 . 1 412 Nodulin-like Gene Family AT1G31470 56.3 1.3e-115 414.5
Lcy9g0967 . 78 265 Nodulin-like Gene Family AT1G76800 78.2 5.2e-72 268.1
Lcy10g1348 . 23 221 Nodulin-like Gene Family AT1G76800 65.8 1.1e-61 233.8
Lcy3g0776 . 10 206 Nodulin-like Gene Family AT1G76800 61.4 6.5e-59 224.6
Lcy3g0776 . 9 205 Nodulin-like Gene Family AT3G25190 66.0 3.2e-62 235.7
Lcy9g0967 . 85 263 Nodulin-like Gene Family AT3G25190 65.8 1.4e-57 220.3
Lcy10g1348 . 29 220 Nodulin-like Gene Family AT3G25190 57.3 1.9e-51 199.9
Lcy9g0967 . 68 265 Nodulin-like Gene Family AT1G21140 72.7 1.8e-72 269.6
Lcy3g0776 . 7 206 Nodulin-like Gene Family AT1G21140 63.0 6.9e-64 241.1
Lcy10g1348 . 26 221 Nodulin-like Gene Family AT1G21140 68.4 5.8e-63 238.0
Lcy9g0967 . 71 265 Nodulin-like Gene Family AT3G43630 73.7 6.2e-73 271.2
Lcy10g1348 . 26 217 Nodulin-like Gene Family AT3G43630 68.7 4.5e-63 238.4
Lcy3g0776 . 7 202 Nodulin-like Gene Family AT3G43630 62.2 1.6e-60 229.9
Lcy9g0967 . 76 265 Nodulin-like Gene Family AT3G43660 73.7 6.8e-72 267.7
Lcy10g1348 . 6 221 Nodulin-like Gene Family AT3G43660 64.4 3.4e-63 238.8
Lcy3g0776 . 7 206 Nodulin-like Gene Family AT3G43660 62.0 2.2e-62 236.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000074 3 8 10 5 4 11 0 10 11 18 9 11 11 13 11 12 10 9 1 10 18 10 13 12 11 11 7 8 9 5 281