Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0350 ATGTCTATGATTTATTCTTTGCAGATTGCCCCCTTTGATCCAACTAAGAAGAAGAAGAAGAAGAAGGTTGTACTTCAGGATCCGGCCGATGAGTCTGTTGACAAGTTAGCAGAGAAAACTGAAAATTTGTCTGTTTCTGATGGTTTGGAGACGACCACATTTTCTGGACTTAAAAAGAAGAAAAAGAAACCAGTAGAGGCTAGCTCCTTGAATGATGATGGTGCCGATGCCATGGAGGATTTGGATGATCAAGCGGGAGAGAATGAAGAACGGGAGGGAATTGTTCTACAATATCGTTATCCTTGGGAGGGAAGTGATCGCGATTATGAATATGAGGAGGCTATGTTCGAAAGAGGGGAAGATATGATCATCTTTTTATACAATGTGAGTTTGCGTGGAAGGCTTGGAACTTCATTGCTGGTTTATTGGGGGCATAGGAGAGTGGAGGATTGGCTTGTTGAGGCCCTTATTGCGTGGAATCTGAAGCAAAAAGCAAAGCTTCTTGGACGGGTGTTCAACATTCTTAGAGAGAATAATCCAGAGCTAGCAGGCGATAGGCGTAGAACAGTTATGAGGCCTCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTTTTTGTCAATTTCATGGATCTATGTAAAACTGCCAAGTTTAGCTCTATGCACCATGGTTTTGTTGTGAATTTCTGTCCGACAGTTGATCTGATGCATCGACAGCCAGACCATGTTATGGCTTTCTTATTGGCCGAACTGGGAACCAGTGGATCTCTTGATGGACAGCAGAGATTAGTTGTTAAAGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGTCGATATGTCAACGAATATGTGATTTGTATTGGGTGCAAGAGTCCAGACACTATCCTTTCAAAGGAGAATCGACTCTTCTTTCTCAGATGCGAGAAGTGTGGTTCTGGACGATCGGTTGCTCCAATTAAAGCTGGTTTTGTTGCTCGTGTTGGCCGGAGGAACGCCGGGACGTGA 1011 43.72 MSMIYSLQIAPFDPTKKKKKKKVVLQDPADESVDKLAEKTENLSVSDGLETTTFSGLKKKKKKPVEASSLNDDGADAMEDLDDQAGENEEREGIVLQYRYPWEGSDRDYEYEEAMFERGEDMIIFLYNVSLRGRLGTSLLVYWGHRRVEDWLVEALIAWNLKQKAKLLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTAKFSSMHHGFVVNFCPTVDLMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICIGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRNAGT 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5888867 5897786 + Maker00032691 Lcy11g0350 646251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0350 336 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 17 323 IPR045196 GO:0001731(PANTHER)|GO:0001732(PANTHER)|GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005850(PANTHER)|GO:0006413(InterPro)|GO:0031369(PANTHER)
Lcy11g0350 336 FunFam Eukaryotic translation initiation factor 2 subunit 219 321 - -
Lcy11g0350 336 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 285 320 IPR016190 GO:0003743(InterPro)|GO:0006413(InterPro)
Lcy11g0350 336 SMART eIF2Bneu4 186 315 IPR002735 GO:0003743(InterPro)|GO:0006413(InterPro)
Lcy11g0350 336 MobiDBLite consensus disorder prediction 54 69 - -
Lcy11g0350 336 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 226 288 IPR016189 GO:0003743(InterPro)|GO:0006413(InterPro)
Lcy11g0350 336 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 166 215 IPR016189 GO:0003743(InterPro)|GO:0006413(InterPro)
Lcy11g0350 336 Gene3D - 162 321 - -
Lcy11g0350 336 Pfam Domain found in IF2B/IF5 224 314 IPR002735 GO:0003743(InterPro)|GO:0006413(InterPro)
Lcy11g0350 336 MobiDBLite consensus disorder prediction 54 79 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0017 Lcy-Chr11:156841 Lcy11g0350 Lcy-Chr11:5888867 3.17E-153 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0350 K03238 - csv:101220978 443.736