Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy11g0350 | ATGTCTATGATTTATTCTTTGCAGATTGCCCCCTTTGATCCAACTAAGAAGAAGAAGAAGAAGAAGGTTGTACTTCAGGATCCGGCCGATGAGTCTGTTGACAAGTTAGCAGAGAAAACTGAAAATTTGTCTGTTTCTGATGGTTTGGAGACGACCACATTTTCTGGACTTAAAAAGAAGAAAAAGAAACCAGTAGAGGCTAGCTCCTTGAATGATGATGGTGCCGATGCCATGGAGGATTTGGATGATCAAGCGGGAGAGAATGAAGAACGGGAGGGAATTGTTCTACAATATCGTTATCCTTGGGAGGGAAGTGATCGCGATTATGAATATGAGGAGGCTATGTTCGAAAGAGGGGAAGATATGATCATCTTTTTATACAATGTGAGTTTGCGTGGAAGGCTTGGAACTTCATTGCTGGTTTATTGGGGGCATAGGAGAGTGGAGGATTGGCTTGTTGAGGCCCTTATTGCGTGGAATCTGAAGCAAAAAGCAAAGCTTCTTGGACGGGTGTTCAACATTCTTAGAGAGAATAATCCAGAGCTAGCAGGCGATAGGCGTAGAACAGTTATGAGGCCTCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTTTTTGTCAATTTCATGGATCTATGTAAAACTGCCAAGTTTAGCTCTATGCACCATGGTTTTGTTGTGAATTTCTGTCCGACAGTTGATCTGATGCATCGACAGCCAGACCATGTTATGGCTTTCTTATTGGCCGAACTGGGAACCAGTGGATCTCTTGATGGACAGCAGAGATTAGTTGTTAAAGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGTCGATATGTCAACGAATATGTGATTTGTATTGGGTGCAAGAGTCCAGACACTATCCTTTCAAAGGAGAATCGACTCTTCTTTCTCAGATGCGAGAAGTGTGGTTCTGGACGATCGGTTGCTCCAATTAAAGCTGGTTTTGTTGCTCGTGTTGGCCGGAGGAACGCCGGGACGTGA | 1011 | 43.72 | MSMIYSLQIAPFDPTKKKKKKKVVLQDPADESVDKLAEKTENLSVSDGLETTTFSGLKKKKKKPVEASSLNDDGADAMEDLDDQAGENEEREGIVLQYRYPWEGSDRDYEYEEAMFERGEDMIIFLYNVSLRGRLGTSLLVYWGHRRVEDWLVEALIAWNLKQKAKLLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTAKFSSMHHGFVVNFCPTVDLMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICIGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRNAGT | 336 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5888867 | 5897786 | + | Maker00032691 | Lcy11g0350 | 646251 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy11g0350 | 336 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR | 17 | 323 | IPR045196 | GO:0001731(PANTHER)|GO:0001732(PANTHER)|GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005850(PANTHER)|GO:0006413(InterPro)|GO:0031369(PANTHER) | |
Lcy11g0350 | 336 | FunFam | Eukaryotic translation initiation factor 2 subunit | 219 | 321 | - | - | |
Lcy11g0350 | 336 | SUPERFAMILY | Zinc-binding domain of translation initiation factor 2 beta | 285 | 320 | IPR016190 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Lcy11g0350 | 336 | SMART | eIF2Bneu4 | 186 | 315 | IPR002735 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Lcy11g0350 | 336 | MobiDBLite | consensus disorder prediction | 54 | 69 | - | - | |
Lcy11g0350 | 336 | SUPERFAMILY | Translation initiation factor 2 beta, aIF2beta, N-terminal domain | 226 | 288 | IPR016189 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Lcy11g0350 | 336 | SUPERFAMILY | Translation initiation factor 2 beta, aIF2beta, N-terminal domain | 166 | 215 | IPR016189 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Lcy11g0350 | 336 | Gene3D | - | 162 | 321 | - | - | |
Lcy11g0350 | 336 | Pfam | Domain found in IF2B/IF5 | 224 | 314 | IPR002735 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Lcy11g0350 | 336 | MobiDBLite | consensus disorder prediction | 54 | 79 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g0017 | Lcy-Chr11:156841 | Lcy11g0350 | Lcy-Chr11:5888867 | 3.17E-153 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy11g0350 | K03238 | - | csv:101220978 | 443.736 |