Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0363 ATGAAGCCACGTCTCTCCGCCACTCTCTCCGCCGCTGAAATGGAGAAAAGTGAGGCAAATATGGCGGCGGCGGTCAGTCCGTGTGCGGCTTGCAAGATTCTACGGCGGAGATGCAGAGAGAATTGCGTATTGGGGCCCTATTTTCCACCAAATGAGCCTCTCAAATTCACCATTGCCCATAGGGTATTTGGTGCTAGCAACATCATCAAGTTACTTCAGGATCTTCCTAAATCGCAAAGAGCAGACGCAGTGAACAGTATGGTATACGAAGCGAGTGCAAGAATAAGAGATCCAGTTTACGGGAGCACAGGCTCGATTTTCCAACTCCAAAGACAAATAAATGAGTTGCAAGCAGAGTTAGCCAAGGCTCAAGCAGAGCTTCTCAACATGCAATGTCAACAAGCCAATTTGGTGAGTCTAATTTGCAAGGAATTGGCTCAAATGCCACAACCACCAATGTTTGATCACAATTCACTTGATGGCATTTTCAACATTGGTAGCCCTCAAAGTTATCATCAAAGCTATTCACATTTGATTGAGGATAGTAATATTTTGGAGCCTCTTTGGACTTAG 573 45.2 MKPRLSATLSAAEMEKSEANMAAAVSPCAACKILRRRCRENCVLGPYFPPNEPLKFTIAHRVFGASNIIKLLQDLPKSQRADAVNSMVYEASARIRDPVYGSTGSIFQLQRQINELQAELAKAQAELLNMQCQQANLVSLICKELAQMPQPPMFDHNSLDGIFNIGSPQSYHQSYSHLIEDSNILEPLWT 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6064387 6067051 - Maker00032597 Lcy11g0363 646264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0363 190 ProSiteProfiles LOB domain profile. 26 127 IPR004883 -
Lcy11g0363 190 Coils Coil 106 133 - -
Lcy11g0363 190 Pfam Lateral organ boundaries (LOB) domain 27 124 IPR004883 -
Lcy11g0363 190 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 25 147 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0363 Lcy-Chr11:6064387 Lcy8g1878 Lcy-Chr8:45098791 1.94E-60 dispersed
Lcy11g0363 Lcy-Chr11:6064387 Lcy11g0364 Lcy-Chr11:6118504 3.55E-77 tandem
Lcy11g0363 Lcy-Chr11:6064387 Lcy7g1059 Lcy-Chr7:11260556 5.74E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19087 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0363 - - - 0.0