Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0389 ATGGAGAAATCTGGGTATGGTCGCGATGGGATTTTCAGGTCCTTACGGCCTCCGATCGTCTTTCCCAAAGACCCCAATCTCTCGATGGTCTCTTTCCTCTTCCGGAATTCATCGTCTTATTCCGACAGGCTCGCCATTGTCGATGCCGAATCCTCTGATTCTGTGTCGTATTCCCAGCTTAAAGCCTCTGCGATTAGGGTCTCCAATGGCTTGCTCCAATTGGGTATCGAGAAAAACGATGTGGTACTTATTTTTGCACCAAATTCAGTTCAATTCTCCATCTGTTTCATCGGAATTGTTGCCATTGGGGCTATTGTAACCACTTGTAATCCTGTCTTCACGGTCTTTGAGTTAACCAAGCAAGTTAGAGATGCTAAACCCAAACTTGTGATATCTGTTGCTGAATTGTGGGACAAAGTGAAGGATCTAGACATCCCAACAGTGTTACTAGACCAGGAAGTTCCTTCAGCAATCCCCTCTTCAAAATTTTTCAGTTTCAATGATTTGATGGACATGGCTGGTGAGAAATCTGGCTCTGAGTTCCCAATTGTTGGGGTGAAACAGAGTGATACAGCTGCACTTCTATATTCATCAGGAACAACAGGAGCCAGTAAGGGTGTCATTTTGACTCACAGAAACTTTATAACGTCTTCACTGATGATAACAATGGACCAGACGTTTCGTGGAGAGGAAATTGGCGTATTTCTGAACTTTTTGCCAATGTTTCATGTGTTTGGATTGGCTTGTATAACATATGCGCAGCTGCAGAAAGGGAACACCATTATTTCTATGCCAAGGTTTAACCTGGAGAAGGCCTTGTGGGCAGTGGAGAAGTACAAGGTGACAGATCTGTGGGTTGTGCCGCCTGTTGTGCTTGCTTTGGCAAAGCAGAGTGTGGTGAAGAAATACAATCTTTCATCCGTGAAGCGTCTCGGTTCAGGGGCTGCACCTCTCGGGAAGGAATTGATGGAGGAATGTGCTAATAACATTCCCAGTGCTGTGGTTCTCCAGGGTTATGGTATGACTGAGACTTGTGGAGTTGTCTCTTTGGAGAATCCAGCAGTTGGCAAACGAAATTCTGGTTCAGCTGGAACACTTGCCTCTGGTGTTGAGGCTCAAATAGTCAGTGTAGATACTTTGAAGCCACTCCCTCCCAATCAATATGGAGAGATACAGGTTCGGGGACCAAATATGATGCTAGGATATTTCAACAATCCACGGGCCACCAAGCAAACTATTGATAAATATGGCTGGGTGCATACTGGAGACCTTGGTTACTTTGATGAAAACGGGCAGCTTTATGTTGTTGATCGAATCAAGGAACTCATCAAGTACAAAGGACAAAGAAGTGGCAGCCTCGAAGAGTCAGTTGCTGGTGCAATTAATTCAGTTGTTTACAAAGTTGGTTTGGATGTGATCAATGCTCCAATTGGTGTGGAAAGAGTTGTTGTACTTAATTCAGCAACTTTATCTTTTAATTCAACAGCCTCAATCAATCAAAAGGATTTCTTGGCCAATGAAGCCTTCTCCCCAATTTCAAAGGGGCCTTTGTTGAAGGACCCTCCTTTGTTTATCGTCGAAGGACCTAAACAATCCATGTCTATCTCAAAGGATATTATTGGGCCTATTCTTGCTAAAGATGGTTCTAAGCAAAGTGGCCGCTCCAAAGCTCTTAATCCCTCTCATCTTGAAGAGCGTGATTTTTTAGTTGCACCAGCTGAACTTGAAGCACTGTTGGTTTCTCACCCCGAGATACTAGATGCTGTTGTCATCCCCTACCCCGATGCTGAAGCGGGAGAAGTTCCTATCGCATATGTCGTTCGATCTACCAATAGTTATTTGACTGAAGAGGACATCCTCAAATTCGTCGCCGATCAGGTTGCTCAGAATGCATCAGGAATCAAACTTGCCTTTCTCCTGGAACAGGTTTCTCCTTACAAAAGGTTAAGAAGAGTAACATTCATCAGCAGTGTCCCCAAGTCTGTTTCTGGGAAAATCCTCAGGAGAGAACTCATCGAGAAAGTAAGAGCTAAAATCTGA 2040 44.17 MEKSGYGRDGIFRSLRPPIVFPKDPNLSMVSFLFRNSSSYSDRLAIVDAESSDSVSYSQLKASAIRVSNGLLQLGIEKNDVVLIFAPNSVQFSICFIGIVAIGAIVTTCNPVFTVFELTKQVRDAKPKLVISVAELWDKVKDLDIPTVLLDQEVPSAIPSSKFFSFNDLMDMAGEKSGSEFPIVGVKQSDTAALLYSSGTTGASKGVILTHRNFITSSLMITMDQTFRGEEIGVFLNFLPMFHVFGLACITYAQLQKGNTIISMPRFNLEKALWAVEKYKVTDLWVVPPVVLALAKQSVVKKYNLSSVKRLGSGAAPLGKELMEECANNIPSAVVLQGYGMTETCGVVSLENPAVGKRNSGSAGTLASGVEAQIVSVDTLKPLPPNQYGEIQVRGPNMMLGYFNNPRATKQTIDKYGWVHTGDLGYFDENGQLYVVDRIKELIKYKGQRSGSLEESVAGAINSVVYKVGLDVINAPIGVERVVVLNSATLSFNSTASINQKDFLANEAFSPISKGPLLKDPPLFIVEGPKQSMSISKDIIGPILAKDGSKQSGRSKALNPSHLEERDFLVAPAELEALLVSHPEILDAVVIPYPDAEAGEVPIAYVVRSTNSYLTEEDILKFVADQVAQNASGIKLAFLLEQVSPYKRLRRVTFISSVPKSVSGKILRRELIEKVRAKI 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6730451 6735739 - Maker00032587 Lcy11g0389 646290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0389 679 ProSitePatterns Putative AMP-binding domain signature. 194 205 IPR020845 -
Lcy11g0389 679 SUPERFAMILY Acetyl-CoA synthetase-like 568 677 - -
Lcy11g0389 679 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 449 - GO:0016405(PANTHER)
Lcy11g0389 679 Pfam AMP-binding enzyme 35 403 IPR000873 -
Lcy11g0389 679 Gene3D - 9 441 IPR042099 -
Lcy11g0389 679 Gene3D - 564 678 IPR045851 -
Lcy11g0389 679 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 440 - -
Lcy11g0389 679 SUPERFAMILY Acetyl-CoA synthetase-like 17 452 - -
Lcy11g0389 679 CDD 4CL 21 671 - -
Lcy11g0389 679 Pfam AMP-binding enzyme C-terminal domain 574 665 IPR025110 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0389 Lcy-Chr11:6730451 Lcy12g0501 Lcy-Chr12:6031207 2.77E-113 dispersed
Lcy13g0850 Lcy-Chr13:14736393 Lcy11g0389 Lcy-Chr11:6730451 7.07E-14 transposed
Lcy11g0389 Lcy-Chr11:6730451 Lcy5g0304 Lcy-Chr5:2882684 9.13E-210 wgd
Lcy11g0389 Lcy-Chr11:6730451 Lcy8g0946 Lcy-Chr8:33605182 3.53E-107 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0389 K01904 - csv:101220141 804.283