Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0391 ATGGCTTCCTTATCAATGGCAACCATTTTATCTCGTCTCTCTCTTTTGGGGTTTGCATCGAGATATTCTTTAAAACCATTATTTATTCCCCCCAAAAGTAGTAGAATCGAGAGATTAAATCGATTGAGACCCTTCTCCATGGCTTCGGCTCCTAAAGAATCTCCGGCCAACAATCCGGGACTTCACGCTACCCCCGACGATGCTACTAAAGGTTACATCATGCAACAGACTATGTTTCGGATTAAGGATCCTAAAGCCAGTCTTGACTTCTATTCTCGAGTTCTGGGCATGTCATTACTCAAGAGGCTGGATTTTCCTGAAATGAAGTTTAGCTTGTACTTTTTGGGCTATGAGGATCCTGCTTCTGCACCAGACAGCTCAGTTGATAGAACAGTCTGGACTTTTGGTCGGAAGGCTACGATTGAGTTAACACACAACTGGGGTACTGAAAGTGACCCTGAATTTAAAGGATATCACAATGGGAACTCAGATCCTCGTGGCTTTGGACACATTGGTATCACTGTTGATGACACAATTAAGGCATGTGAGAGATTTGAACGGCTAGGTGTGGAATTTGTTAAAAAACCAGACGACGACTTGTTTGTGCTATCAAACAAGGATGTCTCCATCTATGACTGTTGGGATGGCAACAACCAAACCTGGAACTTAGACTTCCGCAGAGGCTTATTTGAGAGAGAGATTAGCAGCTGGGTGGATTTAGTGGAAAAATTAAATGACATTCACTTAGTCCCAGAGGAGGATGAAATTTTGTGGCAGCTGGAAGGTTCAGGCAGCTTCATTGTTCATATCTTTTTGTCTCCCTTGGAGGTGGAAGATTGGCTTGCTGAAGGTATAATTGCTTGGAATCTGAAACAGGAAGCTAAAGTAGTGGCTAGTTGGCTTTCAAAGCAACCTTATGACACTTATGGAAAGAAAGAAATGCGAGAACATTCGAAGATAAGTTTTCTCGTTTCGATACCTTTTGTAACTATGTACAAAATACGGCCTTGTGGCAAGATGAAAGGAATTGCATTTATAAAGGATCCTGATGGCTACTGGATTGAAATCTTTGACCTCAAAGCTATTGGAAAAATCACTTCTGATGCTGCTTGA 1113 41.96 MASLSMATILSRLSLLGFASRYSLKPLFIPPKSSRIERLNRLRPFSMASAPKESPANNPGLHATPDDATKGYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDPASAPDSSVDRTVWTFGRKATIELTHNWGTESDPEFKGYHNGNSDPRGFGHIGITVDDTIKACERFERLGVEFVKKPDDDLFVLSNKDVSIYDCWDGNNQTWNLDFRRGLFEREISSWVDLVEKLNDIHLVPEEDEILWQLEGSGSFIVHIFLSPLEVEDWLAEGIIAWNLKQEAKVVASWLSKQPYDTYGKKEMREHSKISFLVSIPFVTMYKIRPCGKMKGIAFIKDPDGYWIEIFDLKAIGKITSDAA 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6865065 6875809 + Maker00032784 Lcy11g0391 646292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0391 370 NCBIfam lactoylglutathione lyase 74 198 IPR004361 GO:0004462(InterPro)|GO:0046872(InterPro)
Lcy11g0391 370 Gene3D - 49 221 IPR029068 -
Lcy11g0391 370 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 73 226 IPR037523 -
Lcy11g0391 370 CDD GlxI_Zn 74 198 - -
Lcy11g0391 370 Gene3D - 276 361 IPR029068 -
Lcy11g0391 370 PANTHER LACTOYLGLUTATHIONE LYASE GLYOXALASE I 337 364 - -
Lcy11g0391 370 ProSitePatterns Glyoxalase I signature 1. 76 97 IPR018146 GO:0004462(InterPro)|GO:0046872(InterPro)
Lcy11g0391 370 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 65 199 IPR029068 -
Lcy11g0391 370 MobiDBLite consensus disorder prediction 48 67 - -
Lcy11g0391 370 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 75 199 IPR004360 -
Lcy11g0391 370 ProSitePatterns Glyoxalase I signature 2. 161 177 IPR018146 GO:0004462(InterPro)|GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0391 Lcy-Chr11:6865065 Lcy12g2201 Lcy-Chr12:43250118 2.70E-26 dispersed
Lcy1g2332 Lcy-Chr1:36365782 Lcy11g0391 Lcy-Chr11:6865065 6.94E-19 wgd
Lcy10g0751 Lcy-Chr10:22560138 Lcy11g0391 Lcy-Chr11:6865065 2.45E-21 wgd
Lcy11g0391 Lcy-Chr11:6865065 Lcy4g1367 Lcy-Chr4:33195452 1.10E-16 wgd
Lcy11g0391 Lcy-Chr11:6865065 Lcy9g0139 Lcy-Chr9:2990621 2.47E-19 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0391 K01759 - mdm:103448063 314.694