Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0449 ATGGCCATGGCTATGGCCCATCACAGAGAGAGTGGCGATGGGGGTATCAATGGCCACCTTGACAGCACCGGCAAGTATGTTCGATACACGACGGAGCAAGTGGAGGCTCTTGAGCGAGTCTATGCTGAATGTCCTAAACCGAGCTCTTTGCGCCGCCAGCAGCTGGTTCGTGACTGCCCCATTTTGGCCAACATCGAGCCCAAGCAGATCAAAGTCTGGTTCCAGAACCGCAGGTGTAGAGAGAAGCAGAGGAAAGAGGCTTCTCGTTTGCAGTCATTAAACAGTAAATTGACGGCCATGAACAAGCTGTTGATGGAGGAGAATGATAGGTTGCAGAAACAAGTGTCTCAGCTCGTCTGTGAAAATGGGTATATGCGGCAACATTTGCAAACTGCTAATGCACCAGCAGCAACAACTAATGATGCCAACAGTGACTCAGTGGCTACTAACCCTCAACATTCACTTAGAGATGCTAGTAGCCCTGCTGGACTCCTGTCTATTGCAGAGGAGATTTTGGCAGCCTTCCTATCAAAGGCTACGGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTGGGAATCTTTGCCATTTCACAAAGTTGCAGTGGAGTGGCTGCTCGAGCCTGTGGTCTTGTCAAGATCCTAAAAGATCGCCCATCTTGGTTTCGTGATTGCCGGAACCTTGAAGTCTTTACAATGTTTCCCACTGGTAATGGTGGGACAATCGAACTTGTATATACACAGGTTTACGCTCCTACTACATTAGCGCCTGCACGAGATTTTTGGACTCTCAGATACACCAAAACTTTGGAAAATGGCAATCTTGTGGTTTCTGAGAGATCACTGTCCGGATCTGGCACCGGGCCTAATGCAGCTTCTGCTGCTCAGTTTGTGAGAGCTGAAATGCTTCCCAGTGGCTATTTGATTCGTCCATGTGAGGGTGGAGGTTCGATCATCCACATTGTAGATCACCTAAATCTTGAGCCTTGGAGTGTACCAGAGGTAGTACGACCACTATACGAATCATCAAAGGCTGTGGCCCAGAAAATGACTATAGCAGCTCTTCGGTACATTAGGCAAATCGCTCAAGAGACAAGCGGCGAAGTAGTATACAGTTTAGGCAGGCAACCAGCCGTTCTTCGAACTTTTAGCCAAAGATTGAGCAGAGGATTTAATGATGCTGTAAATGGATTTAATGATGATGGATGGTCTTTAATCAATTGTGATGGAGCTGAAGACGTGACTCTTGCCATAAATTCAAGAAAGAATTTGAATACATCATATGATCCAGTCAATTCTCTTGCATTCCATGGGGGTGTCCTTTGTGCTAAGGCTTCTATGCTTCTCCAAAACGTTCCTCCCATTGCTCTAATTCGTTTCTTGAGGGAGCATCGTTCCGAGTGGGCTGATTTCAATGTTGATGCCTATTCTGCTGCATCGTTAAAAACTGGTTCATACGCATACCCGGGCATGAGACCGACTAGGTTTACAGGGAGCCAAATCATCATGCCGCTTGGCCATACAATCGAACAAGAAGAGTTGCTTGAAGTTGTACGGCTTGAAAGTCACCCTCTTGCTCAAGAAGATGCTTTTATGTCCCGGGACGTTCATCTCTTGCAGATGTGTAGTGGAATCGATGAGAATGCTGTTGGGGCGTGTTCCGAACTTGTGTTTGCTCCAATTGATGAGATGTTCCCTGATGATGCTGTGCTGCTGCCTTCTGGTTTCAGGATCATCCCATTGCATTCTAAAACAGGTGACCCAAAAGATACATGGAACTCAAATAGAACTCTGGATCTCACTTCCAGTCTCGAAGTTGGCTCATCTGCTTCTCAAGATGCTGCTGCATCAACATCGAACTTCAGGTCGGTCTTGACCATCGCTTTCCAGTTCCCGTTCGGTAGTAACCTGCAGGATGATGTTGCAGCAATGGCGAGACAGTATGTTCGGAGTGTTGTTTCAGCCGTGCAGAGGGTTGCAGTTGCCATATCTCCCTCTGGATTAAGCTCACCATCAGAACCAAAGCTATCATCTGCTTGTCCGGAAGCTCTAACACTGGCTCGATGGATCTGCCATAGCTACAGATGCCATACAGGAACAGAATTGGTGGCATCAGACAGTGGGGATAGCGACTCAGTGTTGAAACATCTATGGAATCATCAGGATGCAATTCTCTGCTGTTCCCTCAAGTCGCTGCCCCCAGTGTTCATGTTTGCGAACCAAGCAGGCCTCGACATGTTGGAGACGACCTTGGTTGCCTTACAAGACATCACCTTGGATAAGATTCTTGACGACTCGGCCCGCAAGGCTTTCTCTGCTGATTTTTCCAACTTAATGCACCAGGGCTTTGCTTACATTCCTGCTGGAATTTGCATGTCGACAATGGGGCGCCATGCTTCGTTTGAACAAGCCATTGCATGGAAAGTCCTTGCTGAAGATGAGTCTACTGTGCACTGTCTTGCCTTCTCCTTTGTCAACTGGTCCTTCCTGTGA 2514 47.81 MAMAMAHHRESGDGGINGHLDSTGKYVRYTTEQVEALERVYAECPKPSSLRRQQLVRDCPILANIEPKQIKVWFQNRRCREKQRKEASRLQSLNSKLTAMNKLLMEENDRLQKQVSQLVCENGYMRQHLQTANAPAATTNDANSDSVATNPQHSLRDASSPAGLLSIAEEILAAFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVKILKDRPSWFRDCRNLEVFTMFPTGNGGTIELVYTQVYAPTTLAPARDFWTLRYTKTLENGNLVVSERSLSGSGTGPNAASAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEPWSVPEVVRPLYESSKAVAQKMTIAALRYIRQIAQETSGEVVYSLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSLINCDGAEDVTLAINSRKNLNTSYDPVNSLAFHGGVLCAKASMLLQNVPPIALIRFLREHRSEWADFNVDAYSAASLKTGSYAYPGMRPTRFTGSQIIMPLGHTIEQEELLEVVRLESHPLAQEDAFMSRDVHLLQMCSGIDENAVGACSELVFAPIDEMFPDDAVLLPSGFRIIPLHSKTGDPKDTWNSNRTLDLTSSLEVGSSASQDAAASTSNFRSVLTIAFQFPFGSNLQDDVAAMARQYVRSVVSAVQRVAVAISPSGLSSPSEPKLSSACPEALTLARWICHSYRCHTGTELVASDSGDSDSVLKHLWNHQDAILCCSLKSLPPVFMFANQAGLDMLETTLVALQDITLDKILDDSARKAFSADFSNLMHQGFAYIPAGICMSTMGRHASFEQAIAWKVLAEDESTVHCLAFSFVNWSFL 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9211654 9219684 - Maker00032654 Lcy11g0449 646350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0449 837 MobiDBLite consensus disorder prediction 133 155 - -
Lcy11g0449 837 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677(InterPro)
Lcy11g0449 837 SMART START_1 166 368 IPR002913 GO:0008289(InterPro)
Lcy11g0449 837 CDD homeodomain 25 85 IPR001356 GO:0003677(InterPro)
Lcy11g0449 837 Gene3D - 193 375 IPR023393 -
Lcy11g0449 837 SUPERFAMILY Bet v1-like 166 370 - -
Lcy11g0449 837 Pfam START domain 167 367 IPR002913 GO:0008289(InterPro)
Lcy11g0449 837 Gene3D - 19 91 - -
Lcy11g0449 837 FunFam Homeobox-leucine zipper protein REVOLUTA 25 80 - -
Lcy11g0449 837 Coils Coil 90 121 - -
Lcy11g0449 837 Pfam MEKHLA domain 692 836 IPR013978 -
Lcy11g0449 837 CDD bZIP 77 116 - -
Lcy11g0449 837 SMART HOX_1 22 88 IPR001356 GO:0003677(InterPro)
Lcy11g0449 837 SUPERFAMILY Homeodomain-like 23 87 IPR009057 -
Lcy11g0449 837 Pfam Homeodomain 25 83 IPR001356 GO:0003677(InterPro)
Lcy11g0449 837 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 20 837 IPR044830 GO:0003700(InterPro)
Lcy11g0449 837 ProSiteProfiles START domain profile. 157 377 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0449 Lcy-Chr11:9211654 Lcy1g0128 Lcy-Chr1:1094770 0 dispersed
Lcy8g1904 Lcy-Chr8:45297684 Lcy11g0449 Lcy-Chr11:9211654 0 transposed
Lcy10g0519 Lcy-Chr10:13333604 Lcy11g0449 Lcy-Chr11:9211654 6.85E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19093 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0449 K09338 - rcu:8266275 1348.57