Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy11g0522 | ATGGCCGATGCTCACCAATTGCCCCGCCGGAAAGCCCTTGGGAAGCGTGCCTCCGCTGCCGACCCCGACCGCGACTCCGACTCCGCCACCGCTGCTGCCATCGGGGCCGCCCCTGCTCCCTGTGGCGCTTGCAAGTTTCTCAGAAGAAAATGCGTCAATGGCTGCATCTTTGCACCGCATTTCGCCTCCGATCAAGGTGCCGCTCGCTTCGCCGCCGTGCATAAGGTCTTCGGAGCGAGTAACGTGTCGAAGCTGCTGCTGCATATTCCGGTCAGCCGACGAAACGACGCTGTCGTCACCATTTCCTATGAGGCTCAGGCTAGACTCTCCGACCCTGTCTATGGCTGTGTCTCAACTGTACTTGCCCTGCAACAACAGGTGGCATCTCTGCAGGCGGAGCTTGCCGCGGTTCAAACTCAATTGATAAGCAGCAGGTTGGCATTTGCAACTGCAATTCAAAACTCACAGCCACCCCAAGTCGGAGTGCTGCAGCCGGCTTACTCGAACAACTCCTCCATCTCCGTCACTGCCTCCACCTCCGCTCATAATGCGATCAATTTGAGTAGTTTTGCTTCGAATTACGACCTTCCAACCGAGACTGCCACATCTCCCCATCCCTTAGAGCCTCTTCACCTATCCCACCGATCGATCGAAGAGGAGGAAGATGAGGAAAATAGCCAGTTGCCCACCATCTTCACCGACGAGTTACTCCGCCAGAGATGA | 723 | 56.71 | MADAHQLPRRKALGKRASAADPDRDSDSATAAAIGAAPAPCGACKFLRRKCVNGCIFAPHFASDQGAARFAAVHKVFGASNVSKLLLHIPVSRRNDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQTQLISSRLAFATAIQNSQPPQVGVLQPAYSNNSSISVTASTSAHNAINLSSFASNYDLPTETATSPHPLEPLHLSHRSIEEEEDEENSQLPTIFTDELLRQR | 240 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 12170869 | 12176425 | + | Maker00005081 | Lcy11g0522 | 646423 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy11g0522 | 240 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Lcy11g0522 | 240 | ProSiteProfiles | LOB domain profile. | 39 | 141 | IPR004883 | - | |
Lcy11g0522 | 240 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 38 | 205 | - | GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER) | |
Lcy11g0522 | 240 | MobiDBLite | consensus disorder prediction | 216 | 240 | - | - | |
Lcy11g0522 | 240 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Lcy11g0522 | 240 | Pfam | Lateral organ boundaries (LOB) domain | 40 | 138 | IPR004883 | - | |
Lcy11g0522 | 240 | Coils | Coil | 120 | 140 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g0522 | Lcy-Chr11:12170869 | Lcy13g0596 | Lcy-Chr13:7782883 | 1.91E-49 | dispersed | |
Lcy10g0181 | Lcy-Chr10:2497599 | Lcy11g0522 | Lcy-Chr11:12170869 | 1.95E-34 | wgd | |
Lcy11g0522 | Lcy-Chr11:12170869 | Lcy4g0786 | Lcy-Chr4:9452814 | 6.96E-38 | wgd | |
Lcy11g0522 | Lcy-Chr11:12170869 | Lcy4g1549 | Lcy-Chr4:39163632 | 1.20E-29 | wgd | |
Lcy11g0522 | Lcy-Chr11:12170869 | Lcy8g0393 | Lcy-Chr8:12067168 | 1.36E-26 | wgd | |
Lcy11g0522 | Lcy-Chr11:12170869 | Lcy9g0581 | Lcy-Chr9:18811423 | 1.52E-24 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19095 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy11g0522 | - | - | - | 0.0 |