Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0522 ATGGCCGATGCTCACCAATTGCCCCGCCGGAAAGCCCTTGGGAAGCGTGCCTCCGCTGCCGACCCCGACCGCGACTCCGACTCCGCCACCGCTGCTGCCATCGGGGCCGCCCCTGCTCCCTGTGGCGCTTGCAAGTTTCTCAGAAGAAAATGCGTCAATGGCTGCATCTTTGCACCGCATTTCGCCTCCGATCAAGGTGCCGCTCGCTTCGCCGCCGTGCATAAGGTCTTCGGAGCGAGTAACGTGTCGAAGCTGCTGCTGCATATTCCGGTCAGCCGACGAAACGACGCTGTCGTCACCATTTCCTATGAGGCTCAGGCTAGACTCTCCGACCCTGTCTATGGCTGTGTCTCAACTGTACTTGCCCTGCAACAACAGGTGGCATCTCTGCAGGCGGAGCTTGCCGCGGTTCAAACTCAATTGATAAGCAGCAGGTTGGCATTTGCAACTGCAATTCAAAACTCACAGCCACCCCAAGTCGGAGTGCTGCAGCCGGCTTACTCGAACAACTCCTCCATCTCCGTCACTGCCTCCACCTCCGCTCATAATGCGATCAATTTGAGTAGTTTTGCTTCGAATTACGACCTTCCAACCGAGACTGCCACATCTCCCCATCCCTTAGAGCCTCTTCACCTATCCCACCGATCGATCGAAGAGGAGGAAGATGAGGAAAATAGCCAGTTGCCCACCATCTTCACCGACGAGTTACTCCGCCAGAGATGA 723 56.71 MADAHQLPRRKALGKRASAADPDRDSDSATAAAIGAAPAPCGACKFLRRKCVNGCIFAPHFASDQGAARFAAVHKVFGASNVSKLLLHIPVSRRNDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQTQLISSRLAFATAIQNSQPPQVGVLQPAYSNNSSISVTASTSAHNAINLSSFASNYDLPTETATSPHPLEPLHLSHRSIEEEEDEENSQLPTIFTDELLRQR 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12170869 12176425 + Maker00005081 Lcy11g0522 646423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0522 240 MobiDBLite consensus disorder prediction 1 26 - -
Lcy11g0522 240 ProSiteProfiles LOB domain profile. 39 141 IPR004883 -
Lcy11g0522 240 PANTHER LOB DOMAIN CONTAINING PROTEIN 38 205 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Lcy11g0522 240 MobiDBLite consensus disorder prediction 216 240 - -
Lcy11g0522 240 MobiDBLite consensus disorder prediction 1 23 - -
Lcy11g0522 240 Pfam Lateral organ boundaries (LOB) domain 40 138 IPR004883 -
Lcy11g0522 240 Coils Coil 120 140 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0522 Lcy-Chr11:12170869 Lcy13g0596 Lcy-Chr13:7782883 1.91E-49 dispersed
Lcy10g0181 Lcy-Chr10:2497599 Lcy11g0522 Lcy-Chr11:12170869 1.95E-34 wgd
Lcy11g0522 Lcy-Chr11:12170869 Lcy4g0786 Lcy-Chr4:9452814 6.96E-38 wgd
Lcy11g0522 Lcy-Chr11:12170869 Lcy4g1549 Lcy-Chr4:39163632 1.20E-29 wgd
Lcy11g0522 Lcy-Chr11:12170869 Lcy8g0393 Lcy-Chr8:12067168 1.36E-26 wgd
Lcy11g0522 Lcy-Chr11:12170869 Lcy9g0581 Lcy-Chr9:18811423 1.52E-24 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19095 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0522 - - - 0.0