Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0532 ATGGCTTCTTCGTCCTCTGATCCTGGCTTCAAACACGAAGCCGGTGCCTGTAGCGCTGCTGCTGCTGGAGGAGGAACGGCGGAGTCTTCGGAGGTTGTAATGGCGAATGATCAGCTTTTACTGTACAGAGGATTGAAGAAAGCGAAGAAAGAGAGAGGTTGCACTGCCAAAGAGCGCATCAGTAAAATGCCTCCATGTGCTGCTGGAAAAAGAAGCTCCATATATCGCGGAGTCACTAGAGTTGAGTCTGTGTCCATAGAGGGAAACTTTGATGCTATGCGGCTAGGATATGATCAATTGACTCTGCCTGAATGTATTGACCTCATGAGGTATCGTATCAAAATTGGTTATCTGACATTGCCTGTGATGTACGCCTGCTCTTTATTTTTACCTTTTTCTCTGCTGACTAGCGCCTGTGAATGGTTTGATGATACTAGGCATAGATGGACTGGTCGTTATGAAGCTCATCTCTGGGATAAAAGTACTTGGAACCAGAACCAGAATAAGAAGGGGAAGCAAGTGTATCTGGGAGCATATGATGAAGAAGAAGCAGCTGCTAGGGCATACGATTTGGCTGCCTTAAAATATTGGGGTCCTGGGACTCTTATTAATTTTCCAGTGACTGATTATACAAGAGACCTTGAAGAAATGCAGAATGTTTCAAGAGAGGAATACCTTGCATCTCTCAGGAGAAAGAGCAGTGGATTCTCCAGGGGAATATCTAAATATCGTGGTCTCTCAAGTCGATGGGAGCCTTCATTTGGTCGTATGCCGGGCCCTGATTACGTCAACAGCTTAAATTATGGTGCTGGAGATGATCAAGCAACAGAAAGCGAATTCGTCCACAGCTTCTGCATTGAAAGGAAGATTGACTTAACTAGTCACATTAAGTGGTGGGGCCCCAACAAAACTCGAACAGCCAGTGCTGGCTCAAAGTCATCAGAAGAAGACAAACATAGTTGCGCTGGAGAAGTTGGCAGTGAACTCAAAGCTCTTGGACAGACCGCCCGTCCTACAGAGCCATATGAGATGCCCTGTTTGGGTACATTACATGGGGTAAAGAAGGTTGCTTCCAAGGTCTCTGCTTTAAGCATTTTGTCACGGTCGGCGGCCTACAAGAGTTTGCAGGAGAAAGCTTCGAAGTTACAGGAAATTAACAACGAGAATGATGAAAACGAAAATAAAAACACTGTTAACAAGATAGATCATGGGAAAGCGGTCGAAACACATACAAGTCAAGGTGGTGATCCCAGCGAGAGATATGGGGTTGCTTTTGGAACAAGTGGTGGATTGCCACTTCAGAGAAATATGTTCCCTTTGACTCCATTCTTAACTGCACCTCTTCTTAGCAGTTACAACACTGTTGATCCCTTGGGAGATCCGATTCATTGGACATCTCTTGTTTCTGTTCTTCCTACCGGGCTTTCTCGTACATCCGAGGTTACAAAGACTGAAACCTCTTCAACTTACAGTGACGATGAACACGAAAGAGAACCCATACAGTTGAAGAAGAAAATGAAATATGAAGTCTTAGAATATCACACATGTACGACTTCAGCGCTTTCCGGACATCCATTCGAACTCGCAGCGGCTCTGTCTCTTGAAGAACTTCATGCTCTTCTTAACGCTGAAGAGAAAATTATGCAGAAGAATACTATCGCCGATATAATACCCACGGCCATGGCAGCGTTCAAAGCTCCAAGTTCAGTCGGCGGACGAGGGCGAGGAAGACGAAATTTCAATGGCAGAGGGCGTGTGACGCAACCTTTTATTTCTAGCCCTAATTCTCCTTTTCATGGGTCAAGCTCAAACGACAGA 1818 45.27 MASSSSDPGFKHEAGACSAAAAGGGTAESSEVVMANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRVESVSIEGNFDAMRLGYDQLTLPECIDLMRYRIKIGYLTLPVMYACSLFLPFSLLTSACEWFDDTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDEEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGISKYRGLSSRWEPSFGRMPGPDYVNSLNYGAGDDQATESEFVHSFCIERKIDLTSHIKWWGPNKTRTASAGSKSSEEDKHSCAGEVGSELKALGQTARPTEPYEMPCLGTLHGVKKVASKVSALSILSRSAAYKSLQEKASKLQEINNENDENENKNTVNKIDHGKAVETHTSQGGDPSERYGVAFGTSGGLPLQRNMFPLTPFLTAPLLSSYNTVDPLGDPIHWTSLVSVLPTGLSRTSEVTKTETSSTYSDDEHEREPIQLKKKMKYEVLEYHTCTTSALSGHPFELAAALSLEELHALLNAEEKIMQKNTIADIIPTAMAAFKAPSSVGGRGRGRRNFNGRGRVTQPFISSPNSPFHGSSSNDR 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12585232 12592540 + Maker00005110 Lcy11g0532 646433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0532 606 MobiDBLite consensus disorder prediction 567 606 - -
Lcy11g0532 606 SMART rav1_2 145 212 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g0532 606 SUPERFAMILY DNA-binding domain 145 207 IPR016177 GO:0003677(InterPro)
Lcy11g0532 606 ProSiteProfiles AP2/ERF domain profile. 140 206 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g0532 606 MobiDBLite consensus disorder prediction 304 323 - -
Lcy11g0532 606 Pfam AP2 domain 146 198 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g0532 606 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 48 316 - -
Lcy11g0532 606 FunFam AP2-like ethylene-responsive transcription factor 141 208 - -
Lcy11g0532 606 MobiDBLite consensus disorder prediction 585 606 - -
Lcy11g0532 606 Coils Coil 372 395 - -
Lcy11g0532 606 Gene3D AP2/ERF domain 145 208 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0532 Lcy-Chr11:12585232 Lcy7g0538 Lcy-Chr7:4770610 3.14E-49 dispersed
Lcy10g0392 Lcy-Chr10:8243982 Lcy11g0532 Lcy-Chr11:12585232 2.38E-46 wgd
Lcy11g0532 Lcy-Chr11:12585232 Lcy4g1350 Lcy-Chr4:32415061 2.86E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19097 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0532 K09285 - csv:101206434 678.322