Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0558 ATGAAAAACAAGGTGATTTTCGAGGTTATAGTCGAGTCTGGGAGCTCTCCTTCATATTCGTTGGGTTTACATCGTTCTTCAACCGATAGGGAAGCGATCGAGATTGTAGCTCTCTTGTCTTTGATTGAGGAGTTTCAGTATAGGGAAGGGAGGAAGGACATTCGTTGTTGGAGTCTTAGCCCTTCCAAGGGCTTTTTGTGCAGTTCTTTTTTTAAGTGGTTGCTTAGCCCCTCCCCTCGTAGAGGGCAGAGGAAGATCTGGACCACATCTTGTGGAATTGCACCTTTGCGTGTTCTGTTTGGAGTTTATTCTTTGAGGCCTTTGGGTTGCAGGTTCGGAGCTTCAGAGACCGAGGAGTTCCTCCTCCATCTGCCTTTCAGAGATAAGGGGAAGTTACTTTGGTCCGAAAAAATTCGAGTTGCTCTTTATGTTCAGAAAGCAGCATTACATTTTATTGATGCCGTAAATCGGGAGGAGTACCATCTGTCAGATGAGGCTAGGAATGCTGGCTATAATATTCATCCAGATGAGCTTGCAGCCATAGTCCGTAGCCATGATCATAAGGCATTCAGATTCCATGGTGGTGTTGAAGGACTTTCAAGGAAAGTTTCTGTTGCTCTAGATGCAGGTGTTAGTAAAAAGGATACGTCCAAGAGACAAGAGATTTATGGTTATAATCGTTACACAGAGAAACCTTCCAGATCCTTTTTGGTGTTTGTATGGGAAGCACTACATGATTTGACGTTAATCATCCTAATAGTTTGTGCACTAATTTCTTTAGGCGTTGGAATTGCCACCGAAGGATGGCCAAAGGGAACATATGATGGCTTAGGAATTCTACTCAGTATAGTATTGGTCGTCTTGGTTACTTCTATTAGTGATTACAAGCAGTCTTTGCAATTCAAGGATCTTGACCGGGAGAAGCAAAAAATTTATGTTGATGTCACTAGGGATGGGCTTAGGGAAAAAGTTTTGATTTATGACTTGGTTGTTGGAGATATTGTTCATCTATCCATTGGAGATCAGGTTCCTGCTGATGGAGTTTTCATATCAGGATATAGTCTGCTAATTGATGAATCCAGCTTATCAGGTGAGAGTGAACCAGTGAACATAGATGAGGAGAAACCATTTCTTCTTTCAGGAACCAAAGTGCAAGATGGATCTGGAAAGATGATGGTAACAACAGTTGGCATGAGAACTGAATGGGGAAAATTGATGGAAACTCTCAGCGAGGGAGGAGAAGATGAGACTCCACTGCAGGTGAAGCTGAATGGTGTAGCAACTCTTATTGGTAAAATTGGTTTGACTTTTGCTGTATTGACATTCCTGGTTATGACAGGAAGGTTTCTCTGGGAAAAGGCTGCTCACCATCAATTTACGAAGTGGACTTCAAGTGATGCATTAAAACTCTTAGATTTCTTTGCCATTGCAGTTACCATAATAGTCGTCGCAGTTCCTGAAGGTTTACCGCTGGCAGTGACATTGAGCCTTGCATTTGCCATGAAGAAATTGATGAATGAAAGAGCACTAGTTAGGCATCTATCTGCATGTGAGACGATGGGTTCAGCTAGTTGCATCTGCACAGATAAGACAGGGACGTTAACTACAAATCATATGATAGTGAGCCGTGCATGGATTTGTGAAAACTTTATGGAGAATAAAGACCATGAGAGTGTAGAAAAATTGAAATCAGAGATCTCTAAAGACGTTTTAGACATATTATTGCAGTCTATATTTCAAAATACTAGCTGCGAAGTGACTAAAGATAAAGACGGGCAGAATGCAATTGTTGGTGGAACACCAACGGAATCAGCAATATTAGAGTTTGGCTTGCATTTGGGTGGAGATTTTCATGCTCAAAGTGTAGAATATAAGATACTTAAGGTTGAGCCTTTCAATTCTGTTAGAAAGAAGATGTCTGTACTTGTGGCTCTTCCTAATGGTGGGGTCAGAGCTTTTGTCAAAGGTGCATCTGAAATAATACTAAGTATGTGTGACAAGTTTATTGATTCCAATGGAGAATCTATCGACTTAACAGAAGAGAAGGTAAAGAATGCTACAAATGTTATCAATAGTTTTGCCAATGAAGCTTTGAGGACGCTTTGCTTGGCCTTCAAAGATATAGAGGACTCCGGTGATAAATCTATTCCAGATGCTGGATACACATTAATTGCAGTTGTTGGAATCAAGGACCCTGTACGCCCAGGGGTCAAGGAAGCTGTCAAAACTTGTTTAGCAGCTGGAATAACTGTCCGTATGGTCACTGGTGACAATATTAATACGGCAAAGGCTATTGCTAAAGAATGTGGTATACTTACAGCCGATGGTTTAGCTATAGAAGGACCAGACTTCCGTAATTTATCCTCAGAGCAGATGAAGGAAGTTATACCAAAACTCCAGGTAATGGCTCGGTCCTTGCCACTGGACAAATACACATTGGTTAACAATTTGCGAAGTATGGATGAGGTCGTTGCAGTGACTGGCGATGGGACGAATGATGCTCCAGCTTTGCATGAGTCAGATATTGGACTAGCTATGGGCATTGCTGGCACCGAGAACGAGCTCTTGGATTCGTTAATAGCTTACCCTGATAAGTGCTCAAAATGGTCCAAAGTAGATTTGATGAAGGAAAGTGATGAGGATCAATTACAGATCATCAAGTCATCAGTGAAGCAAAGGTTGTTCAGTGGATCTTATCGCACTTGGGTGGCCAAAGAAAATGCCGATGTCATCATAATGGATGACAATTTTTCAACCATTGTAAATGTTGCGAGATGGGGACGTGCTGTGTATATTAACATACAAAAGTTTGTGCAGTTTCAACTAACAGTTAACATTGTTGCTCTAGTGATCAATTTTGTTTCTGCTTGCCTCTCAGGATCTGCTCCTCTTACGGCTGTTCAGTTACTTTGGGTCAACTTGATTATGGACACTCTTGGTGCTTTGGCACTAGCCACAGAGCCTCCGAATGATGGACTTATGCAGAGACCCCCAATTCCCAAGGGGGTTAGCTTCATTACCAACGCCATGTGGAGGAATATTATTGGTCAGAGTATCTATCAACTTGTTGTTCTTGCAGTTCTTAACTTTGGGGGAAAGCAACTTCTTGGACTTAGTGGATCCGATTCCACAAAAGTTCTGAACACTTTGATATTTAACTCATTCGTGTTCTGCCAGGTTTTCAACGAAATTAACAGCCGTGAGATAGAGAAGATCAACATCCTCCGAGGGATGTTCAGCAGCTGGATATTTTTGGTAGTAATGGTATCCACAGTGGTTTTCCAAATAATAATTGTTGAACTTTTGGGTGCTTTCGCTAGCACTGTACCACTGAGCTGGGAACTGTGGGGACTGAGCGTGGTGATTGGATTTGTGAGCATGCCAGTTGCAGTTGTGTTGAAGTTCATCCCTGTTGGTAAAGATAAAGAAGTAGCATACACAGCCCATCATGATGGCTACGAACGACTCTCTTCTGGCCCAGAGCGGGTTTGA 3492 42.04 MKNKVIFEVIVESGSSPSYSLGLHRSSTDREAIEIVALLSLIEEFQYREGRKDIRCWSLSPSKGFLCSSFFKWLLSPSPRRGQRKIWTTSCGIAPLRVLFGVYSLRPLGCRFGASETEEFLLHLPFRDKGKLLWSEKIRVALYVQKAALHFIDAVNREEYHLSDEARNAGYNIHPDELAAIVRSHDHKAFRFHGGVEGLSRKVSVALDAGVSKKDTSKRQEIYGYNRYTEKPSRSFLVFVWEALHDLTLIILIVCALISLGVGIATEGWPKGTYDGLGILLSIVLVVLVTSISDYKQSLQFKDLDREKQKIYVDVTRDGLREKVLIYDLVVGDIVHLSIGDQVPADGVFISGYSLLIDESSLSGESEPVNIDEEKPFLLSGTKVQDGSGKMMVTTVGMRTEWGKLMETLSEGGEDETPLQVKLNGVATLIGKIGLTFAVLTFLVMTGRFLWEKAAHHQFTKWTSSDALKLLDFFAIAVTIIVVAVPEGLPLAVTLSLAFAMKKLMNERALVRHLSACETMGSASCICTDKTGTLTTNHMIVSRAWICENFMENKDHESVEKLKSEISKDVLDILLQSIFQNTSCEVTKDKDGQNAIVGGTPTESAILEFGLHLGGDFHAQSVEYKILKVEPFNSVRKKMSVLVALPNGGVRAFVKGASEIILSMCDKFIDSNGESIDLTEEKVKNATNVINSFANEALRTLCLAFKDIEDSGDKSIPDAGYTLIAVVGIKDPVRPGVKEAVKTCLAAGITVRMVTGDNINTAKAIAKECGILTADGLAIEGPDFRNLSSEQMKEVIPKLQVMARSLPLDKYTLVNNLRSMDEVVAVTGDGTNDAPALHESDIGLAMGIAGTENELLDSLIAYPDKCSKWSKVDLMKESDEDQLQIIKSSVKQRLFSGSYRTWVAKENADVIIMDDNFSTIVNVARWGRAVYINIQKFVQFQLTVNIVALVINFVSACLSGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLMQRPPIPKGVSFITNAMWRNIIGQSIYQLVVLAVLNFGGKQLLGLSGSDSTKVLNTLIFNSFVFCQVFNEINSREIEKINILRGMFSSWIFLVVMVSTVVFQIIIVELLGAFASTVPLSWELWGLSVVIGFVSMPVAVVLKFIPVGKDKEVAYTAHHDGYERLSSGPERV 1163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13665440 13674359 + Maker00032927 Lcy11g0558 646459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0558 1163 SUPERFAMILY Calcium ATPase, transduction domain A 311 408 IPR008250 -
Lcy11g0558 1163 Gene3D - 524 852 IPR023214 -
Lcy11g0558 1163 Gene3D - 242 523 - -
Lcy11g0558 1163 FunFam copper-transporting ATPase 1 isoform X2 727 772 - -
Lcy11g0558 1163 FunFam Calcium-transporting ATPase 895 1140 - -
Lcy11g0558 1163 SUPERFAMILY Calcium ATPase, transmembrane domain M 193 1138 IPR023298 -
Lcy11g0558 1163 PRINTS P-type cation-transporting ATPase superfamily signature 725 736 - -
Lcy11g0558 1163 PRINTS P-type cation-transporting ATPase superfamily signature 747 757 - -
Lcy11g0558 1163 PRINTS P-type cation-transporting ATPase superfamily signature 827 846 - -
Lcy11g0558 1163 PRINTS P-type cation-transporting ATPase superfamily signature 527 541 - -
Lcy11g0558 1163 PRINTS P-type cation-transporting ATPase superfamily signature 358 372 - -
Lcy11g0558 1163 SMART Cation_ATPase_N_a_2 169 264 IPR004014 -
Lcy11g0558 1163 SFLD Haloacid Dehalogenase 509 929 - -
Lcy11g0558 1163 Pfam Cation transporting ATPase, C-terminus 962 1136 IPR006068 -
Lcy11g0558 1163 Gene3D - 210 410 - -
Lcy11g0558 1163 SUPERFAMILY HAD-like 718 851 IPR036412 -
Lcy11g0558 1163 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 533 737 IPR023299 GO:0000166(InterPro)
Lcy11g0558 1163 FunFam Calcium-transporting ATPase 289 410 - -
Lcy11g0558 1163 PANTHER CATION TRANSPORTING ATPASE 164 852 - GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER)
Lcy11g0558 1163 Pfam Cation transport ATPase (P-type) 583 667 - -
Lcy11g0558 1163 CDD P-type_ATPase_Ca_PMCA-like 217 1010 - -
Lcy11g0558 1163 Pfam haloacid dehalogenase-like hydrolase 719 839 - -
Lcy11g0558 1163 Pfam E1-E2 ATPase 309 506 - -
Lcy11g0558 1163 SFLD p-type atpase 509 929 IPR044492 -
Lcy11g0558 1163 Gene3D - 537 732 IPR023299 GO:0000166(InterPro)
Lcy11g0558 1163 PRINTS Sodium/potassium-transporting ATPase signature 277 297 - -
Lcy11g0558 1163 PRINTS Sodium/potassium-transporting ATPase signature 652 670 - -
Lcy11g0558 1163 PRINTS Sodium/potassium-transporting ATPase signature 520 541 - -
Lcy11g0558 1163 ProSitePatterns E1-E2 ATPases phosphorylation site. 529 535 IPR018303 -
Lcy11g0558 1163 FunFam Calcium-transporting ATPase 537 732 - -
Lcy11g0558 1163 Coils Coil 676 696 - -
Lcy11g0558 1163 NCBIfam calcium-translocating P-type ATPase, PMCA-type 183 852 IPR006408 GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro)
Lcy11g0558 1163 Gene3D - 900 1146 - -
Lcy11g0558 1163 NCBIfam HAD-IC family P-type ATPase 279 557 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy11g0558 1163 Pfam Cation transporter/ATPase, N-terminus 193 259 IPR004014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0558 Lcy-Chr11:13665440 Lcy1g0909 Lcy-Chr1:7934281 0 dispersed
Lcy10g1080 Lcy-Chr10:33013924 Lcy11g0558 Lcy-Chr11:13665440 0 transposed
Lcy11g0558 Lcy-Chr11:13665440 Lcy2g2203 Lcy-Chr2:45335269 1.08E-22 wgd
Lcy11g0558 Lcy-Chr11:13665440 Lcy5g1035 Lcy-Chr5:20230962 6.52E-24 wgd
Lcy11g0558 Lcy-Chr11:13665440 Lcy6g1549 Lcy-Chr6:25901498 5.44E-16 wgd
Lcy11g0558 Lcy-Chr11:13665440 Lcy7g1990 Lcy-Chr7:46642966 7.32E-18 wgd
Lcy11g0558 Lcy-Chr11:13665440 Lcy8g0124 Lcy-Chr8:3009530 1.11E-18 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0558 K01537 - csv:101206199 1692.94