Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0678 ATGATGCAGCCGGATCAGAGCTCTGAGCTTTACAGATTCTTGGCCCAGAACGGAGCCTTCAGCCTGGGCGGCGGCGCCGGATCCTGCGGCTTTCCGGCGGCCCAAAGCTTGTCGAGCTCATCCTCTTATTACCCTTTGGATCAGTCGGCGGCGGCCGCCACTGAGCCACCGCTGCCGTCGCCCCATGACAGAGCCCTCGCCGCCCTCAAGAATCACAAGGAAGCTGAGAAGCGTAGGAGAGAGAGAATCAACTCTCATCTTGATAAGCTTCGGACTCTTCTTCCTTGTAATTCTAAGACCGACAAGGCATCGCTTCTGGCAAAAGTGGTTCAGCGAGTGAAAGAGCTGAAGCATCAGACCTCAGACATCGCAGAGCTCGAAACCTTCCCCTCGGAGACCGACGAGATCACAGTCCTCTCCGGCGAGCAATCCGACGACGGACGCCTCCTCTTCAAGGCGTCGCTGTGCTGCGAGGACCGCTCGGACCTCATCCCGGAGCTGAACGACATCCTCAACTCGCTCCAGCTGAAGACACTGAGGGCCGACATCGTCACTGTCGGCGGCAGAATCCGCAATGTTCTTCTGATCGCCGCCAACGACCACCACAGCGTCGAGTCCGTCCATTTTCTGCAGAACGCATTGAAGTCTCTCCTTGAACGGTCCAATTCTAGCGATAGATCCAAGAGGAGGCGTCTTGTAATTCACCGCAAATGA 714 57.0 MMQPDQSSELYRFLAQNGAFSLGGGAGSCGFPAAQSLSSSSSYYPLDQSAAAATEPPLPSPHDRALAALKNHKEAEKRRRERINSHLDKLRTLLPCNSKTDKASLLAKVVQRVKELKHQTSDIAELETFPSETDEITVLSGEQSDDGRLLFKASLCCEDRSDLIPELNDILNSLQLKTLRADIVTVGGRIRNVLLIAANDHHSVESVHFLQNALKSLLERSNSSDRSKRRRLVIHRK 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 18668235 18671536 - Maker00035094 Lcy11g0678 646579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0678 237 CDD bHLH_AtAIG1_like 63 138 - -
Lcy11g0678 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 67 116 IPR011598 GO:0046983(InterPro)
Lcy11g0678 237 Gene3D - 63 127 IPR036638 GO:0046983(InterPro)
Lcy11g0678 237 SMART finulus 73 122 IPR011598 GO:0046983(InterPro)
Lcy11g0678 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 126 IPR036638 GO:0046983(InterPro)
Lcy11g0678 237 PANTHER TRANSCRIPTION FACTOR BHLH30 49 234 IPR045847 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g0678 237 FunFam transcription factor bHLH30 62 125 - -
Lcy11g0678 237 Pfam Helix-loop-helix DNA-binding domain 71 117 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0678 Lcy-Chr11:18668235 Lcy7g1401 Lcy-Chr7:22044513 9.56E-47 dispersed
Lcy10g2187 Lcy-Chr10:45786575 Lcy11g0678 Lcy-Chr11:18668235 1.72E-32 transposed
Lcy10g0891 Lcy-Chr10:27941587 Lcy11g0678 Lcy-Chr11:18668235 1.23E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19101 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0678 - - - 0.0