Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy11g0712 | ATGAGTTCCTCCTCAATCCGACTTATCACGACAAAGGAAGATTTTTGTGGCAAGCCGGCATGTGTGCGCTTTAATGGAACTTATGGGGGGAAAGGAATAATAAGGTCTTATTTTGTTGGATTGGAGGCCCTTCCTTTAATAGCGCTTCATTCTGTGGGCTTTCTTTTTACACGAATGGTTAGTATTGGTTGGGTTCATGGTTGGAGCAAACTGACGGATGGAGCGAGGATGAGTCACAGTCGCGGATGGCTGGGGTCATGGGTCGCAGCAATCAAGCAGCGGATGGAAAAGGATGTCGATGAAGTTGGAAAAGTTGCACGTTTCGTGAAGACCAAAGTCGAAGAACTCGACAGAGAGAATCTGGCAAATAGGCAGAGGCCCGGGTGTGGAAAAGGATCAGGAGTAGATAGATCAAGAACAGCAACTACTCTTGCCTTAAAAAAGAAGTTGAAAGACAAGATGACTGAATTCCAGATCTTACGTGAAAAAATCCATCAAGAGTATCGGGAGGTTGTTGAGAGACGGGTTTTCACAGTCACGGGCACTAGGGCTGACGAAGAGACCATCGAGAAATTAATTGAAACTGGGGACAGTGAGCAGATTTTCCAGAAGGCAATTCAAGAACAAGGGCGAGGACAGGTAATGGACACTCTAGCTGAAATTCAAGAGCGTCACAGTGCAGTTAGAGAACTAGAGAGGAAGTTACTCGAGCTACAGCAGGTATTTCTGGACATGGCAGTATTGGTAGATGCACAAGGGGATATGCTCGACAATATCGAATCACACGTTACAAGTGCCGTAGATCATGTGCAACAAGGGAATACTGCTCTTCAAAAGGCAAAGAAGCTGCAAAAGAATTCTAGGAAATGGACGTGCATTGCAATCATAATCCTTTTAATCATCGTTGTGGTCGTAGTAGTGGGAGTCCTTAAGCCTTGGAATAATGGTAAAGGTGCCTAA | 960 | 45.1 | MSSSSIRLITTKEDFCGKPACVRFNGTYGGKGIIRSYFVGLEALPLIALHSVGFLFTRMVSIGWVHGWSKLTDGARMSHSRGWLGSWVAAIKQRMEKDVDEVGKVARFVKTKVEELDRENLANRQRPGCGKGSGVDRSRTATTLALKKKLKDKMTEFQILREKIHQEYREVVERRVFTVTGTRADEETIEKLIETGDSEQIFQKAIQEQGRGQVMDTLAEIQERHSAVRELERKLLELQQVFLDMAVLVDAQGDMLDNIESHVTSAVDHVQQGNTALQKAKKLQKNSRKWTCIAIIILLIIVVVVVVGVLKPWNNGKGA | 319 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 20286431 | 20292011 | + | Maker00035747 | Lcy11g0712 | 646613 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy11g0712 | 319 | SMART | tSNARE_6 | 213 | 280 | IPR000727 | - | |
Lcy11g0712 | 319 | SMART | SynN_4 | 46 | 169 | IPR006011 | GO:0016020(InterPro) | |
Lcy11g0712 | 319 | PANTHER | SYNTAXIN | 89 | 300 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Lcy11g0712 | 319 | FunFam | Syntaxin 132 | 211 | 311 | - | - | |
Lcy11g0712 | 319 | CDD | SNARE_syntaxin1-like | 217 | 279 | - | - | |
Lcy11g0712 | 319 | ProSitePatterns | Syntaxin / epimorphin family signature. | 224 | 263 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
Lcy11g0712 | 319 | SUPERFAMILY | t-snare proteins | 90 | 273 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
Lcy11g0712 | 319 | Coils | Coil | 221 | 241 | - | - | |
Lcy11g0712 | 319 | Gene3D | - | 74 | 176 | - | - | |
Lcy11g0712 | 319 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 218 | 280 | IPR000727 | - | |
Lcy11g0712 | 319 | CDD | SynN | 91 | 205 | IPR006011 | GO:0016020(InterPro) | |
Lcy11g0712 | 319 | Pfam | SNARE domain | 254 | 306 | IPR000727 | - | |
Lcy11g0712 | 319 | Gene3D | - | 208 | 311 | - | - | |
Lcy11g0712 | 319 | Pfam | Syntaxin | 89 | 253 | IPR006011 | GO:0016020(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g0712 | Lcy-Chr11:20286431 | Lcy5g1935 | Lcy-Chr5:42182030 | 6.19E-74 | dispersed | |
Lcy11g0712 | Lcy-Chr11:20286431 | Lcy1g1206 | Lcy-Chr1:11408108 | 1.34E-67 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy11g0712 | K08486 | - | csv:101203075 | 381.333 |