Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0712 ATGAGTTCCTCCTCAATCCGACTTATCACGACAAAGGAAGATTTTTGTGGCAAGCCGGCATGTGTGCGCTTTAATGGAACTTATGGGGGGAAAGGAATAATAAGGTCTTATTTTGTTGGATTGGAGGCCCTTCCTTTAATAGCGCTTCATTCTGTGGGCTTTCTTTTTACACGAATGGTTAGTATTGGTTGGGTTCATGGTTGGAGCAAACTGACGGATGGAGCGAGGATGAGTCACAGTCGCGGATGGCTGGGGTCATGGGTCGCAGCAATCAAGCAGCGGATGGAAAAGGATGTCGATGAAGTTGGAAAAGTTGCACGTTTCGTGAAGACCAAAGTCGAAGAACTCGACAGAGAGAATCTGGCAAATAGGCAGAGGCCCGGGTGTGGAAAAGGATCAGGAGTAGATAGATCAAGAACAGCAACTACTCTTGCCTTAAAAAAGAAGTTGAAAGACAAGATGACTGAATTCCAGATCTTACGTGAAAAAATCCATCAAGAGTATCGGGAGGTTGTTGAGAGACGGGTTTTCACAGTCACGGGCACTAGGGCTGACGAAGAGACCATCGAGAAATTAATTGAAACTGGGGACAGTGAGCAGATTTTCCAGAAGGCAATTCAAGAACAAGGGCGAGGACAGGTAATGGACACTCTAGCTGAAATTCAAGAGCGTCACAGTGCAGTTAGAGAACTAGAGAGGAAGTTACTCGAGCTACAGCAGGTATTTCTGGACATGGCAGTATTGGTAGATGCACAAGGGGATATGCTCGACAATATCGAATCACACGTTACAAGTGCCGTAGATCATGTGCAACAAGGGAATACTGCTCTTCAAAAGGCAAAGAAGCTGCAAAAGAATTCTAGGAAATGGACGTGCATTGCAATCATAATCCTTTTAATCATCGTTGTGGTCGTAGTAGTGGGAGTCCTTAAGCCTTGGAATAATGGTAAAGGTGCCTAA 960 45.1 MSSSSIRLITTKEDFCGKPACVRFNGTYGGKGIIRSYFVGLEALPLIALHSVGFLFTRMVSIGWVHGWSKLTDGARMSHSRGWLGSWVAAIKQRMEKDVDEVGKVARFVKTKVEELDRENLANRQRPGCGKGSGVDRSRTATTLALKKKLKDKMTEFQILREKIHQEYREVVERRVFTVTGTRADEETIEKLIETGDSEQIFQKAIQEQGRGQVMDTLAEIQERHSAVRELERKLLELQQVFLDMAVLVDAQGDMLDNIESHVTSAVDHVQQGNTALQKAKKLQKNSRKWTCIAIIILLIIVVVVVVGVLKPWNNGKGA 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20286431 20292011 + Maker00035747 Lcy11g0712 646613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0712 319 SMART tSNARE_6 213 280 IPR000727 -
Lcy11g0712 319 SMART SynN_4 46 169 IPR006011 GO:0016020(InterPro)
Lcy11g0712 319 PANTHER SYNTAXIN 89 300 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Lcy11g0712 319 FunFam Syntaxin 132 211 311 - -
Lcy11g0712 319 CDD SNARE_syntaxin1-like 217 279 - -
Lcy11g0712 319 ProSitePatterns Syntaxin / epimorphin family signature. 224 263 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Lcy11g0712 319 SUPERFAMILY t-snare proteins 90 273 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Lcy11g0712 319 Coils Coil 221 241 - -
Lcy11g0712 319 Gene3D - 74 176 - -
Lcy11g0712 319 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 218 280 IPR000727 -
Lcy11g0712 319 CDD SynN 91 205 IPR006011 GO:0016020(InterPro)
Lcy11g0712 319 Pfam SNARE domain 254 306 IPR000727 -
Lcy11g0712 319 Gene3D - 208 311 - -
Lcy11g0712 319 Pfam Syntaxin 89 253 IPR006011 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0712 Lcy-Chr11:20286431 Lcy5g1935 Lcy-Chr5:42182030 6.19E-74 dispersed
Lcy11g0712 Lcy-Chr11:20286431 Lcy1g1206 Lcy-Chr1:11408108 1.34E-67 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0712 K08486 - csv:101203075 381.333