Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0805 ATGACTAATGGGTTTGCTTCATGGTCTGATTGGCTGAGTATCTCCTCTCAGTTGGTTCAATTTCCTCCTTTTGATTTGGGCGGGGGAGTTATTGCGGTTGTGGCTAATTCTGACTTCTTCGCTAGTGGAAGGCCCTGGTTGCCGGCATTGGTTAGGATTCTGAATCTAAACTGTAACAATCTCATCACCATTGAGAAATACAGGTCATTGTTAAAGGATGGAATTTTAAGCGAGAATTTCCGATCATGGTACAATTCGAGTGTTGACAGAAGTTGTGGGTGTGGCTATAATCGTGACAATGAATCAGACTTTACTGTCCTGGAATGGGTTGATGGCGCAATGAGAGTTAGTGTGAGTATATACTATGCGGGGAAAGGCTATGAGGAGCAAGTCCTGCTTTTGTGTAGGAATTTTAGTGCAGGGGAGAGCGAGAGATTATCAACACTCTCTAATTGGCTGGGACCATTTGTATGCCCTTGGGGCTCTTTTGCCTTGAATATCAATATGTTGTATGGTAGATACCCTACACTGTGTTTGGTTGGGGCGGGGGGAACCATTTTATTGGTTGAGATCAAATATACACTGTGTTGGGTCATGGCCAATGCTGGAAGGTATACTGGTGGTCAGTCTCGCTGGCTACCAAATGCTCCAAAGCACAAGTTTGCATTTTGGTACACTCGTCGAACACCTGGAGTTCGGACTCAAACATCATATGAGGACAACATAAAAAAGATCGTGGACTTTAGCTCGGTTGAAGGTTTTTGGGTAAGCTATTGCCATTTGGCTCGTCCTTCATCATTACCAAGCCCGACAGATCTGCATCTCTTTAAGGAAGGAATCCGGCCACTCTGGGAGGATTCTGCCAACTGCAATGGTGGAAAGTGGATAATACGATTTAAGAAAGTTGTATCTGGTCGATTTTGGGAAGATTTGGTTCTTGCATTAGTTGGCGACCAGCTTGATTTTGGTGATAACATATGCGGTGCTGTGCTTAGCATTCGTTTCAACGAGGATATTTTGAGTGTCTGGAACCGCAATGCATCTGATCATCAGGCTGTGATGGGTCTGCGAGATTCAATCAAACGGCACTTAAAGCTCCCGCATGGGTACGTAATGGAATACAAACCCCACGACGCCTCTCTGCGTGATAACTCATCATACAGAAACACATGGTTGCGAGGGTAA 1185 44.89 MTNGFASWSDWLSISSQLVQFPPFDLGGGVIAVVANSDFFASGRPWLPALVRILNLNCNNLITIEKYRSLLKDGILSENFRSWYNSSVDRSCGCGYNRDNESDFTVLEWVDGAMRVSVSIYYAGKGYEEQVLLLCRNFSAGESERLSTLSNWLGPFVCPWGSFALNINMLYGRYPTLCLVGAGGTILLVEIKYTLCWVMANAGRYTGGQSRWLPNAPKHKFAFWYTRRTPGVRTQTSYEDNIKKIVDFSSVEGFWVSYCHLARPSSLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDFGDNICGAVLSIRFNEDILSVWNRNASDHQAVMGLRDSIKRHLKLPHGYVMEYKPHDASLRDNSSYRNTWLRG 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24131581 24138287 - Maker00029158 Lcy11g0805 646706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0805 394 ProSitePatterns Eukaryotic initiation factor 4E signature. 272 295 IPR019770 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0006413(InterPro)
Lcy11g0805 394 Gene3D RNA Cap, Translation Initiation Factor Eif4e 214 387 IPR023398 -
Lcy11g0805 394 SUPERFAMILY eIF4e-like 218 390 IPR023398 -
Lcy11g0805 394 Pfam Eukaryotic initiation factor 4E 218 374 IPR001040 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Lcy11g0805 394 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 218 382 IPR001040 GO:0000340(PANTHER)|GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0006413(InterPro)|GO:0016281(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0805 Lcy-Chr11:24131581 Lcy5g1788 Lcy-Chr5:40598968 5.56E-31 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0805 K03259 - csv:101204290 375.941