Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0876 ATGGGGGCGATTATGGCGGTATCAGCTGTTCAAACGCTGCTATTTTTTGCTTTCTTCAACTTGGCTGCTTCCGATACTTATTCCAACGATTTTGGAGTGCTTCAATCCTTGAAAGATGAGTGGCAAAATATTCCACCAAGCTGGGAAACATCAAATGATCCATGTGGAACTCCCTGGGAAGGAGTGACTTGCAACAACTCAAGAGTAATTGCATTGACTTTATCAAATATGGGCCTAAAAGGTAAACTTGGTGGTGACATTGGAGGCCTTACTGAACTGAGACTATTGGACCTTTCCTCCAATCGCGATCTAACTGGTTCAATCTCTCCGGAACTAGGGAGCTTGTTGAATTTGAATATCTTATTTCTCATCTCTCTCAGGTCTTTATATTCTAACAAATTGACTGGTACCATACCACCGACTTTGGGAAAACTCTCCAAACTCTATTGGCTAGACCTGGCAGATAATCAGTTGACTGGTGCTCTCCCAGTTTCGACTCCCAAATCTCCGGGTTTGGATTTGCTTCTTGAGGCTAAACATTTTCATTTCAGCAAAAACCAGTTATCAGGTACCATTTCACCTAATCTTTTTGGCTCCGAGATGGTATTATTACACATATTATTTGACCAAAATAATTTTTCTGGGAGTATCCCACGAACATTGGGACTTGTTAAGACTCTTCATGTTCTTCGACTAGATCGAAATTCTTTAACTGGAGATGTCCCATCAAACCTAAACGACCTAATAAATGTCAATGAATTGAATTTAGCCAACAATAAGCTAACGGGTCCACTACCAAACTTAACTCAAATGAGTTCACTAAATTACGTGGACCTTAGTAACAACTCATTTAATTCATCAGTAGCTCCAGAATGGTTCTCAAATCTACAATCTCTCACCACTCTGATTGTTGAATATGGGTCAATACGAGGATATGTGCCAGAAGAAATCTTTAGCTTACCACATATACAACAAGTAAAACTGAAGAACAATGCATTTGGTGGGACATTAAATATGGATGACAGCATCAGCCAATCATTGCAGCTAGTTGATTTGCAAAATAACACTATATCCTCCGTTACCTCTGTTTCGGGATATACCAACGATTTGCTGCTGATAGGAAATCCTGTGTGTAACACTGGTGTCCTCTCAGATACAAACTATTGTCTGCTTCAACAACGACAAACAAAATCCTATTCTACCAGCCTTGTCAACTGTGGAAGTAAGTTATGTTCTCCTGACGAGAAGCTGAACCCTCAGAGTTGTAAATGTGCCTATCCATATGAAGGGACTTTATACTTTAGAGCACCCACGTCCAGGGAATTGTCCAATATAACTCTGTTTCAATCACTGGAAACGAGCCTTTTGCACCACTTCAACGTTACGCCTTTTATTCAAGACCCTTTCTTTAATGTTGATGATTATCTTGAGATGCAGCTTGCACTTTTTCCAACCAATGATAAGTTTTTCAGTAGGACAGATATTCAGAGATTTGGGCTTGATTTGCACAATCAAACTTACAAACCTCCCCCCGAGTTTGGGCCGTATTATTTCATTGCATCTCGTTATCCATTTTCAGATATGGATAGTGGAACTTCAACCAACACCGGAGTGGTAATTGGAATAGCTGTTGGCTGTGCCTTTCTCGTTCTATGCCTCATTGGAATTGGAACTTATGCAATTCGACAGAAGAGACGTGTAGAAAAGGCCAAGTCAAATGCTTTATTGGTACCACGTGGAAACGATGGTGGAGGTGCACCACAATTAAAGGGAGCCAGGTGGTTTTCTTACGATGAACTTAAAAAATGCACGAATAATTTCTCCATGAGTAATGAGATAGGATCTGGAGGATTTGGCAAGGTATACAGAGGAACGCTGGTGGATGGAAAAGTAGTGGCAATCAAAAGAGCTACGCAAGGATCAATGCAGGGTGGCCATGAGTTCAAGACAGAAATTGAGCTGCTTTCGCGAGTTCATCACAAGAATCTTCTTGGTCTAGTGGGATTTTGTTCTGAACAAGGAGAACAGATCCTTGTTTATGAATTCATGCCTAATGGGACACTTAGACAGAGCCTAGCAGGGTATGTTGCTCCTGAGCCTGGGAAATCTGGTATTTATCTTGATTGGAAGAGAAGACTTCGTATCGCACTTGGGTCTGCCAGAGGATTGACTTACTTGCATGAGCTTGCTAATCCTCCCATAATTCATAGAGATATTAAGTCCACCAACATTTTACTAGATGAATGTTTAAATGCAAAGGTTGCAGATTTTGGCTTGTCCAAGCTTGTCTCAGACAGTGGAAAGGGACATGTTTCTACTCAAGTCAAAGGCACATTGGGTTATTTGGATCCTGAATATTACATGAGTCAACAATTGACTGAGAAAAGTGATGTGTACAGCTTTGGAATAGTTATGTTGGAACTACTAACTGCTAAGTTGCCAATTGAAAAGGGAAAGTACATAGTTCGTGAGGTGCATATGTTGATGAATAAGAGTGATGAAGAATATTATGGTTTGAAGCATATAATGGATGCAACCATAATCAACAATACTACAAGTCTTATTGGGTTTGGAAAGTTCTTAGAGTTGGCCATGCAATGTGTTGAAGAAGCAGCTGCAGACCGGCCCACAATGAGTGAAGTGGTTAAGACAATTGAGAACATTTTGCAAAATGATGGAATAAGTACAACCTCAACATCAGCATCCACATCTGCCACAGAATTTGGGACTTCCAAAACTGCTCCTAGACATCCTTATAATGATGCTATATTGAAAGAGGGTGTCAATGGCCGATGA 2796 40.49 MGAIMAVSAVQTLLFFAFFNLAASDTYSNDFGVLQSLKDEWQNIPPSWETSNDPCGTPWEGVTCNNSRVIALTLSNMGLKGKLGGDIGGLTELRLLDLSSNRDLTGSISPELGSLLNLNILFLISLRSLYSNKLTGTIPPTLGKLSKLYWLDLADNQLTGALPVSTPKSPGLDLLLEAKHFHFSKNQLSGTISPNLFGSEMVLLHILFDQNNFSGSIPRTLGLVKTLHVLRLDRNSLTGDVPSNLNDLINVNELNLANNKLTGPLPNLTQMSSLNYVDLSNNSFNSSVAPEWFSNLQSLTTLIVEYGSIRGYVPEEIFSLPHIQQVKLKNNAFGGTLNMDDSISQSLQLVDLQNNTISSVTSVSGYTNDLLLIGNPVCNTGVLSDTNYCLLQQRQTKSYSTSLVNCGSKLCSPDEKLNPQSCKCAYPYEGTLYFRAPTSRELSNITLFQSLETSLLHHFNVTPFIQDPFFNVDDYLEMQLALFPTNDKFFSRTDIQRFGLDLHNQTYKPPPEFGPYYFIASRYPFSDMDSGTSTNTGVVIGIAVGCAFLVLCLIGIGTYAIRQKRRVEKAKSNALLVPRGNDGGGAPQLKGARWFSYDELKKCTNNFSMSNEIGSGGFGKVYRGTLVDGKVVAIKRATQGSMQGGHEFKTEIELLSRVHHKNLLGLVGFCSEQGEQILVYEFMPNGTLRQSLAGYVAPEPGKSGIYLDWKRRLRIALGSARGLTYLHELANPPIIHRDIKSTNILLDECLNAKVADFGLSKLVSDSGKGHVSTQVKGTLGYLDPEYYMSQQLTEKSDVYSFGIVMLELLTAKLPIEKGKYIVREVHMLMNKSDEEYYGLKHIMDATIINNTTSLIGFGKFLELAMQCVEEAAADRPTMSEVVKTIENILQNDGISTTSTSASTSATEFGTSKTAPRHPYNDAILKEGVNGR 931
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26002677 26009333 - Maker00030694 Lcy11g0876 646777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0876 931 ProSitePatterns Protein kinases ATP-binding region signature. 613 635 IPR017441 GO:0005524(InterPro)
Lcy11g0876 931 Gene3D Ribonuclease Inhibitor 127 200 IPR032675 -
Lcy11g0876 931 Gene3D Ribonuclease Inhibitor 32 126 IPR032675 -
Lcy11g0876 931 Gene3D Ribonuclease Inhibitor 201 268 IPR032675 -
Lcy11g0876 931 FunFam Leucine-rich repeat protein kinase family protein 577 682 - -
Lcy11g0876 931 CDD STKc_IRAK 613 888 - -
Lcy11g0876 931 SMART serkin_6 607 868 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g0876 931 Pfam Protein tyrosine and serine/threonine kinase 608 884 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy11g0876 931 SUPERFAMILY L domain-like 41 378 - -
Lcy11g0876 931 Gene3D Ribonuclease Inhibitor 269 368 IPR032675 -
Lcy11g0876 931 Gene3D Phosphorylase Kinase; domain 1 583 682 - -
Lcy11g0876 931 FunFam Predicted protein 170 391 - -
Lcy11g0876 931 MobiDBLite consensus disorder prediction 896 913 - -
Lcy11g0876 931 Gene3D Transferase(Phosphotransferase) domain 1 683 909 - -
Lcy11g0876 931 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 683 902 - -
Lcy11g0876 931 PANTHER RECEPTOR-LIKE PROTEIN 55 46 886 - -
Lcy11g0876 931 MobiDBLite consensus disorder prediction 896 917 - -
Lcy11g0876 931 SUPERFAMILY Protein kinase-like (PK-like) 592 897 IPR011009 -
Lcy11g0876 931 ProSiteProfiles Protein kinase domain profile. 607 889 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g0876 931 Pfam Leucine rich repeat 273 332 IPR001611 GO:0005515(InterPro)
Lcy11g0876 931 Pfam Leucine rich repeat N-terminal domain 29 65 IPR013210 -
Lcy11g0876 931 ProSitePatterns Serine/Threonine protein kinases active-site signature. 734 746 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0006 Lcy-Chr11:57262 Lcy11g0876 Lcy-Chr11:26002677 2.13E-75 dispersed
Lcy11g0876 Lcy-Chr11:26002677 Lcy5g0015 Lcy-Chr5:386987 0 dispersed
Lcy6g0216 Lcy-Chr6:1974397 Lcy11g0876 Lcy-Chr11:26002677 9.13E-37 dispersed
Lcy11g0876 Lcy-Chr11:26002677 Lcy13g1261 Lcy-Chr13:29715591 8.85E-69 wgd
Lcy11g0876 Lcy-Chr11:26002677 Lcy13g0608 Lcy-Chr13:7963263 4.81E-35 wgd
Lcy11g0876 Lcy-Chr11:26002677 Lcy3g0278 Lcy-Chr3:9050272 5.13E-31 wgd
Lcy11g0876 Lcy-Chr11:26002677 Lcy6g1277 Lcy-Chr6:16048770 1.40E-62 wgd
Lcy11g0876 Lcy-Chr11:26002677 Lcy8g0871 Lcy-Chr8:31362984 6.83E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65445 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0876 - - - 0.0