Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0893 ATGCTCTGCCTCAACCTTGATGGCGGCGCCGACCACCCTCCACTTTGTTCTTCATGTAGCCACCATCAACCTCACTCCGCCGCCACTCCCATGAAAGGAAGCTCCCCAGACCCCACACCAATAAGAAACTCTATTCTTCGTGCTATTTCTCCATTCTTCAAGGTTGATCTCCCAATTCCTTTTGGACTTCCGTCGCCCTGTTTCCGATCCCATCGAAGCACGAAATTTCTCCCCTCCGCCGCTCACTCCGTCACTGGGCAAGCACTTCTATCCCAACTCATCACTCCCGCCGCTGCCCCTCCGTCATCGCTTTGTCTCAAGCGCTCACTCCACCAACATGAGGGAATTCTGAAGGAGAGAAAAAATAAAAATTCTGGGATTACTTGGAATGAATACAAATCCATGACGTTTACATTTAAGTTCGTGAATGAAACATTGAGGCTGGCAAATATTGCTCCTGGGATCTTTCGAAAAGCATTAAGAGATGTCGAGTTTAAGGGATACACCATCCCAGCAGGATGGGCTGTTATGGTCTGTCCTCCAGCCGTCCATTTGGATCCAAAAAATTACGTTGACCCACTTGCCTTCAACCCATGGCGATGGGAGCAGAGATGTGATGGGGCATCAAAGCATTTCATGGCTTTTGGTGGGGGCATGAGATTTTGCATTGGTGCAGACTTTGCCAAATTGCAGATGGCTGTGTTTCTCCATAACATGAAGACAATGGAGGCAGTCGGCGCTAGGGATCTTGCTAGTGAAAAGGACTACGAAGGTGGAGAGTTGAGGGGATTCGACATAGATATTGTTCCACCGATATTCACATCAGTTTTACACAATATAGGGCTAGAAATACCATCGGCATCTACATCTATCCCATACGATGAAACAAAAAATATTCCTACGTATAACTTGGGAGATGATGAAGACCATGGTAGTGAACTCTATGGTGGTCAGGATTGGGGGGACTACGAAGATGATGACGAGTACGAAGATGATGAGGACACAGACGTAGAGGTTGATGAAATAGTGGGAGATGGAGAAGAAGAGATTCACGTACAGAACACTGAGGTTCCTTCTACAGCTGAACAGGAGAAGACATGCTCTTTTATTCCGAATGCTTCATCTAAGGCAATCATCATGACAGACCAGTCTTCCTCTTCTGAAAATGTAGGAATTTGGAGAAATATTTATGTCTAA 1197 46.2 MLCLNLDGGADHPPLCSSCSHHQPHSAATPMKGSSPDPTPIRNSILRAISPFFKVDLPIPFGLPSPCFRSHRSTKFLPSAAHSVTGQALLSQLITPAAAPPSSLCLKRSLHQHEGILKERKNKNSGITWNEYKSMTFTFKFVNETLRLANIAPGIFRKALRDVEFKGYTIPAGWAVMVCPPAVHLDPKNYVDPLAFNPWRWEQRCDGASKHFMAFGGGMRFCIGADFAKLQMAVFLHNMKTMEAVGARDLASEKDYEGGELRGFDIDIVPPIFTSVLHNIGLEIPSASTSIPYDETKNIPTYNLGDDEDHGSELYGGQDWGDYEDDDEYEDDEDTDVEVDEIVGDGEEEIHVQNTEVPSTAEQEKTCSFIPNASSKAIIMTDQSSSSENVGIWRNIYV 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26613718 26624497 + Maker00030711 Lcy11g0893 646794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0893 398 MobiDBLite consensus disorder prediction 301 315 - -
Lcy11g0893 398 MobiDBLite consensus disorder prediction 19 40 - -
Lcy11g0893 398 Pfam Cytochrome P450 122 239 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy11g0893 398 Gene3D Cytochrome P450 110 249 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy11g0893 398 MobiDBLite consensus disorder prediction 299 335 - -
Lcy11g0893 398 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 215 224 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lcy11g0893 398 MobiDBLite consensus disorder prediction 319 335 - -
Lcy11g0893 398 PANTHER CYTOCHROME P450 26 109 241 - GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER)
Lcy11g0893 398 PRINTS B-class P450 signature 222 233 IPR002397 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy11g0893 398 PRINTS B-class P450 signature 213 222 IPR002397 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy11g0893 398 PRINTS B-class P450 signature 157 184 IPR002397 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy11g0893 398 PRINTS B-class P450 signature 140 151 IPR002397 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy11g0893 398 PRINTS B-class P450 signature 185 200 IPR002397 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy11g0893 398 SUPERFAMILY Cytochrome P450 122 239 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0893 Lcy-Chr11:26613718 Lcy6g1968 Lcy-Chr6:41800985 1.11E-69 dispersed
Lcy12g1949 Lcy-Chr12:40854607 Lcy11g0893 Lcy-Chr11:26613718 1.08E-14 transposed
Lcy11g0893 Lcy-Chr11:26613718 Lcy12g0941 Lcy-Chr12:14415155 5.69E-13 wgd
Lcy11g0893 Lcy-Chr11:26613718 Lcy2g1756 Lcy-Chr2:27958605 5.13E-23 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0893 - - - 0.0