Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy11g0915 | ATGGCTGGAAATACTCCCGATGGCAGCTCCAGCAATCCGCCGTCGACGCCCGATTCCCCCTCCACCTCTGCCGCTTTCGAAACAGACCAGCTCCCTCATCTCAGCCACACTTCCGACAACTTCCCCGATGAGGACGAAGCCGCCGTTGATCCTCGTATCGTTCACGACGAGCCTGACCCCGATGACGAGGAGGAAGGAGAGGATCTCTACCACGACAATTTCTTGGACGATTATCGGAGGATGGACGAGCATGACCAGTACGAGTCCTTGGGCCTCGACGATTCTTTAGAGGACGAGAGGGATTTGGATCAGATTATGGAGGACAGACGAGCTGCCGAGATTGAACTCGAAACTCGCGATGCTCAGTTCACCCGTCGGAAGCTTCCTGAGCTACTACATGATCATGATTCAAGCCATTCGGACTTGTTATCCGGAACTTGGTCATCTGTTCTAGTTAGCACAATAATTCTGGATGACTCTGAGGACGACAATTACAGGCCTTCAAAAAGATCAAGAGCTGATTTTAGGCCTCCAGCTGCAGCAAGAAGCTATGATGACATTGATGGTATGCAAAGTTCTCCTGGTAGATCACAAAGGGAAAACTCACGAGACGATGTGCCCATGACTGATCATTCTGTTGATGACCAATATGAGGATGAAGATGATGATGAAAATGAGAATGAGATGTATCGTGTTCAAGGGCCACTTAGAGAACATGTTACCATGGATGCAGTTCGGCGTTTTATAGGCAAAAAGTTCAAGAAATTCTTGGAAACATATGTGAATCCAAAGAGTGGAAATGGTGAGCTTGAGTACATGCGACTGATAAATGAGATGGTGTTAGCCAATAAGTGCAGTTTGGAAATTGATTACAAGCAGTTTATCTTTGTTCATCCAAATATTGCAATCTGGTTGGCTGATGCACCCCAACCCGTCTTAGAAGTTATGGAAGATGTTGCAAAGAAGGTTGTGTTTGACATACATCCAAACTACAAAAATATCCACCAAAAGATCTATGTTCGCATCAATAATTTACCAGTCTACGATCAGATTCGAAATATTAGGCAAATTCATTTAAATACCATGATTCGCATTGGGGGTGTAGTGACCCGACGCTCTGGTGTCTTCCCCCAGTTGCAGCAGGTGAAGTATGATTGCAATAAATGTGGAACAATATTGGGACCATTTTTTCAAAATTCTTATTCAGAGGTTAAGGTCGGTTCCTGTCCTGAATGCCAATCAAAAGGGCCATTCACAGTAAATGTTGAGCAGACTATATATAGGAACTACCAAAAGCTAACCCTCCAAGAAAGTCCAGGAATTGTGCCAGCTGGTCGACTTCCAAGGTACAAAGAAGTGATACTGCTGAATGATCTAATTGATTGTGCCCGTCCTGGGGAAGAAATTGAAGTCACAGGCATTTATACAAATAATTTTGACTTATCATTGAATACAAAGAATGGTTTTCCTGTATTTTCCACTGTCGTTGAAGCAAATTATATTACCAAGAAGCAAGATCTCTTCTCTGCTTACAAGCTTACCCAGGAAGACAAAGAAGAGATTGAGAAGTTGGCTAAAGACCCTAGAATTGGAGAAAGGATTATCAAGTCCATTGCACCATCAATCTATGGTCACGAGGACATAAAAACAGCAATCGCTCTTGCAATGTTTGGAGGTCAAGAAAAAAATGTTGAAGGCAAACACCGGTTACGAGGTGATATCAATGTACTTTTACTAGGTGATCCTGGCACAGCGAAATCTCAATTTCTCAAGTATGTTGAGAAAACTGGGCATAGAGCAGTGTACACCACAGGGAAAGGAGCTTCAGCTGTAGGACTAACAGCGGCAGTGCACAAGGATCCTGTCACAAGGGAGTGGACCCTTGAAGGAGGTGCCCTTGTATTAGCCGATAGAGGAATTTGTCTTATTGATGAGTTTGACAAAATGAATGATCAGGACAGGGTGAGTATCCATGAAGCAATGGAACAGCAAAGCATTAGCATATCAAAAGCTGGAATAGTCACTTCTCTTCAAGCCAGATGTTCTGTCATTGCAGCTGCCAATCCCATTGGAGGAAGGTACGACTCCTCAAAAACATTTACACAAAATGTAGAGCTGACTGATCCTATCATTTCTCGATTTGACATCCTCTGTGTTGTCAAGGATGTGGTAGACTCTATAACAGACGAGATGCTTGCTAAGTTTGTGGTCGATAGTCATTTCAAGTCACAGCCAAAGGGCGCTAATATTGATGATAAGTCCATAAATGAATCTCAGGAGGATAGTCAAGACTCTACAAGGCCACTAGATCCAGAGGTGCTCCCCCAAGATCTGCTGAAGAAGTACATAACTTATGCTAAATTGAATGTTTTTCCAAGGTTGCATGATGCTGATATGGATAAGCTAACACATGTCTATGCAGAACTACGAAGGGAATCTTCTCATGGGCAAGGAGTTCCTATTGCAGTTAGGCACATAGAGTCAATGATACGCATGTCTGAAGCACATGCTAGAATGCACCTCCGGCAGCACGTTACACAAGAAGATGTTGATATGGCAATTCGTGTGTTACTTGATTCTTTCATTTCGACCCAAAAATTTGGGGTGCAGAAAGCTCTGCAAAAGAGCTTCAGAAAGTATATGACTTTCAAGAAGGATTACAATGAACTGCTGCTATATCTTCTCCGAGAGCTTGTGAAGAATGCACTTCACTTTGAGGAAATTGTTCGTGGATCTACAGCGGAGATTACGCACATCAACGTGAAATTGGAAGACCTACAAAGCAGGGCCCAGGAACATGAAATTTATGATCTGAAACCTTTCTTCACCAGCTCTCATTTTTCAAATGCTAATTTTGTGCTGGATGAAGAGCATGGAGTAATCAGGCACCACCTTGCCAGATGA | 2904 | 43.29 | MAGNTPDGSSSNPPSTPDSPSTSAAFETDQLPHLSHTSDNFPDEDEAAVDPRIVHDEPDPDDEEEGEDLYHDNFLDDYRRMDEHDQYESLGLDDSLEDERDLDQIMEDRRAAEIELETRDAQFTRRKLPELLHDHDSSHSDLLSGTWSSVLVSTIILDDSEDDNYRPSKRSRADFRPPAAARSYDDIDGMQSSPGRSQRENSRDDVPMTDHSVDDQYEDEDDDENENEMYRVQGPLREHVTMDAVRRFIGKKFKKFLETYVNPKSGNGELEYMRLINEMVLANKCSLEIDYKQFIFVHPNIAIWLADAPQPVLEVMEDVAKKVVFDIHPNYKNIHQKIYVRINNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGTILGPFFQNSYSEVKVGSCPECQSKGPFTVNVEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFSTVVEANYITKKQDLFSAYKLTQEDKEEIEKLAKDPRIGERIIKSIAPSIYGHEDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGHRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRFDILCVVKDVVDSITDEMLAKFVVDSHFKSQPKGANIDDKSINESQEDSQDSTRPLDPEVLPQDLLKKYITYAKLNVFPRLHDADMDKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIVRGSTAEITHINVKLEDLQSRAQEHEIYDLKPFFTSSHFSNANFVLDEEHGVIRHHLAR | 967 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 27405421 | 27412054 | - | Maker00030837 | Lcy11g0915 | 646816 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy11g0915 | 967 | MobiDBLite | consensus disorder prediction | 38 | 56 | - | - | |
| Lcy11g0915 | 967 | Pfam | MCM OB domain | 350 | 477 | IPR033762 | - | |
| Lcy11g0915 | 967 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 242 | 929 | IPR031327 | GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:0043138(PANTHER)|GO:1902975(PANTHER) | |
| Lcy11g0915 | 967 | FunFam | DNA helicase | 243 | 347 | - | - | |
| Lcy11g0915 | 967 | FunFam | DNA helicase | 378 | 428 | - | - | |
| Lcy11g0915 | 967 | Pfam | MCM N-terminal domain | 251 | 344 | IPR027925 | - | |
| Lcy11g0915 | 967 | MobiDBLite | consensus disorder prediction | 161 | 226 | - | - | |
| Lcy11g0915 | 967 | MobiDBLite | consensus disorder prediction | 1 | 69 | - | - | |
| Lcy11g0915 | 967 | SUPERFAMILY | Nucleic acid-binding proteins | 252 | 499 | IPR012340 | - | |
| Lcy11g0915 | 967 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 383 | 395 | IPR008045 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro) | |
| Lcy11g0915 | 967 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 479 | 490 | IPR008045 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro) | |
| Lcy11g0915 | 967 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 494 | 505 | IPR008045 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro) | |
| Lcy11g0915 | 967 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 360 | 377 | IPR008045 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro) | |
| Lcy11g0915 | 967 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 418 | 432 | IPR008045 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro) | |
| Lcy11g0915 | 967 | MobiDBLite | consensus disorder prediction | 161 | 181 | - | - | |
| Lcy11g0915 | 967 | ProSiteProfiles | MCM family domain profile. | 530 | 736 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lcy11g0915 | 967 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 540 | 864 | IPR027417 | - | |
| Lcy11g0915 | 967 | ProSitePatterns | MCM family signature. | 639 | 647 | IPR018525 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro) | |
| Lcy11g0915 | 967 | SMART | mcm | 347 | 862 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lcy11g0915 | 967 | MobiDBLite | consensus disorder prediction | 746 | 771 | - | - | |
| Lcy11g0915 | 967 | MobiDBLite | consensus disorder prediction | 198 | 213 | - | - | |
| Lcy11g0915 | 967 | Gene3D | - | 378 | 428 | - | - | |
| Lcy11g0915 | 967 | Gene3D | - | 243 | 347 | - | - | |
| Lcy11g0915 | 967 | Gene3D | - | 351 | 476 | IPR012340 | - | |
| Lcy11g0915 | 967 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 631 | 645 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lcy11g0915 | 967 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 710 | 718 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lcy11g0915 | 967 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 571 | 586 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lcy11g0915 | 967 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 659 | 672 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lcy11g0915 | 967 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 683 | 695 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lcy11g0915 | 967 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
| Lcy11g0915 | 967 | CDD | MCM2 | 533 | 860 | - | - | |
| Lcy11g0915 | 967 | Gene3D | - | 510 | 884 | IPR027417 | - | |
| Lcy11g0915 | 967 | FunFam | DNA helicase | 510 | 884 | - | - | |
| Lcy11g0915 | 967 | MobiDBLite | consensus disorder prediction | 753 | 767 | - | - | |
| Lcy11g0915 | 967 | Pfam | Mini-chromosome maintenance protein 2 | 44 | 139 | IPR008045 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)|GO:1905775(InterPro) | |
| Lcy11g0915 | 967 | Pfam | MCM P-loop domain | 518 | 740 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lcy11g0915 | 967 | Pfam | MCM AAA-lid domain | 777 | 861 | IPR041562 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy1g0019 | Lcy-Chr1:184157 | Lcy11g0915 | Lcy-Chr11:27405421 | 7.47E-69 | transposed | |
| Lcy1g0195 | Lcy-Chr1:1792784 | Lcy11g0915 | Lcy-Chr11:27405421 | 4.14E-93 | transposed | |
| Lcy3g0984 | Lcy-Chr3:33658553 | Lcy11g0915 | Lcy-Chr11:27405421 | 5.77E-102 | transposed | |
| Lcy3g1810 | Lcy-Chr3:45311503 | Lcy11g0915 | Lcy-Chr11:27405421 | 6.84E-94 | transposed | |
| Lcy4g0231 | Lcy-Chr4:2853900 | Lcy11g0915 | Lcy-Chr11:27405421 | 1.67E-20 | transposed | |
| Lcy4g2051 | Lcy-Chr4:47083917 | Lcy11g0915 | Lcy-Chr11:27405421 | 2.14E-100 | transposed | |
| Lcy5g0260 | Lcy-Chr5:2459963 | Lcy11g0915 | Lcy-Chr11:27405421 | 1.02E-82 | transposed | |
| Lcy11g0915 | Lcy-Chr11:27405421 | Lcy5g1003 | Lcy-Chr5:18784881 | 7.50E-35 | wgd | |
| Lcy11g0915 | Lcy-Chr11:27405421 | Lcy7g1690 | Lcy-Chr7:34052896 | 7.90E-36 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy11g0915 | K02540 | - | csv:101219546 | 1719.13 |