Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy11g0924 | ATGGACTTCAGCAACTCCAAAAACAATTCCCCCTCACCATCGAAGCCGAGGAGAAAGCATCAAGAGCAACAGCCACAGCAACAAGAGACTACACGGTTTCTCGGAGTGAGAAGGCGGCCATGGGGCAGATACGCCGCTGAAATTAGAGACCCCTCTACGAAAGAGCGGCATTGGCTTGGCACATTTGACACGGCGGAAGAGGCGGCCTTGGCCTACGACCGAGCCGCCCGGTCCATGCGTGGCTCCAAGGCTCGCACTAACTTCGTGTACTCGGACATGCCACACGGCTCCTCGGTGACCTCCATCATCTCTCCCGACGAATCCCAGCTGTCTCCTCTCTTCCCACCAACCCCAGCCCCAACCTCCCTCCCACAAACCCAACCCAACCACCTCTGCTTCACCCTTCACGACCCCTTCACCACCAGTCCATTCCCGGGCAACGACTGGCCACTGCCCGACTCCGACTTTAGCCCCTCCTCTTACCAGCCCGTCACCGCCTTCATGGACACCGGCATCCCACACGACGACGCCGAACTCCCCCCACTACCACCCGACGCCTCTTCTTCCTACAACGACTGCGCCACCATGATCGATTGGTCCACTACCTCCTCCTCTTCCTCCTCCTTCATGGGCTTCGATTCCAACGCGGTTTTGCCGCCTTTCCCTGACACGGGCCATCCAAGATTGCGAACGCTTCCATTGATTTCACGCTCCAAGCTTGATGAATTGGTCTACACCCCGCGCAAATTAGAGAGCCTGACGAGTCGCGAATCAGCCACCCTATTCCAACCAGCAGCTAGCTCCTTCATCCCAGCTGCGTCTGCGTTCAGTTTCCATCAGGAAGATGGAGGGCTCCATTGGATCTGA | 867 | 57.9 | MDFSNSKNNSPSPSKPRRKHQEQQPQQQETTRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLSPLFPPTPAPTSLPQTQPNHLCFTLHDPFTTSPFPGNDWPLPDSDFSPSSYQPVTAFMDTGIPHDDAELPPLPPDASSSYNDCATMIDWSTTSSSSSSFMGFDSNAVLPPFPDTGHPRLRTLPLISRSKLDELVYTPRKLESLTSRESATLFQPAASSFIPAASAFSFHQEDGGLHWI | 288 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 27934080 | 27935940 | - | Maker00030820 | Lcy11g0924 | 646825 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy11g0924 | 288 | PANTHER | AP2 DOMAIN CLASS TRANSCRIPTION FACTOR | 9 | 154 | - | - | |
Lcy11g0924 | 288 | Gene3D | AP2/ERF domain | 31 | 90 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy11g0924 | 288 | PRINTS | Ethylene responsive element binding protein signature | 33 | 44 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy11g0924 | 288 | PRINTS | Ethylene responsive element binding protein signature | 55 | 71 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy11g0924 | 288 | SMART | rav1_2 | 32 | 95 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy11g0924 | 288 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
Lcy11g0924 | 288 | Pfam | AP2 domain | 32 | 82 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy11g0924 | 288 | SUPERFAMILY | DNA-binding domain | 33 | 90 | IPR016177 | GO:0003677(InterPro) | |
Lcy11g0924 | 288 | FunFam | Ethylene-responsive transcription factor 2 | 31 | 90 | - | - | |
Lcy11g0924 | 288 | CDD | AP2 | 31 | 88 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy11g0924 | 288 | ProSiteProfiles | AP2/ERF domain profile. | 32 | 89 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g0924 | Lcy-Chr11:27934080 | Lcy13g1747 | Lcy-Chr13:36408360 | 2.66E-27 | dispersed | |
Lcy10g1050 | Lcy-Chr10:32639154 | Lcy11g0924 | Lcy-Chr11:27934080 | 4.57E-38 | transposed | |
Lcy11g1434 | Lcy-Chr11:38242334 | Lcy11g0924 | Lcy-Chr11:27934080 | 5.74E-31 | transposed | |
Lcy11g0924 | Lcy-Chr11:27934080 | Lcy9g0587 | Lcy-Chr9:19221192 | 2.81E-18 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19107 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy11g0924 | K09286 | - | csv:101205393 | 310.457 |