Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0924 ATGGACTTCAGCAACTCCAAAAACAATTCCCCCTCACCATCGAAGCCGAGGAGAAAGCATCAAGAGCAACAGCCACAGCAACAAGAGACTACACGGTTTCTCGGAGTGAGAAGGCGGCCATGGGGCAGATACGCCGCTGAAATTAGAGACCCCTCTACGAAAGAGCGGCATTGGCTTGGCACATTTGACACGGCGGAAGAGGCGGCCTTGGCCTACGACCGAGCCGCCCGGTCCATGCGTGGCTCCAAGGCTCGCACTAACTTCGTGTACTCGGACATGCCACACGGCTCCTCGGTGACCTCCATCATCTCTCCCGACGAATCCCAGCTGTCTCCTCTCTTCCCACCAACCCCAGCCCCAACCTCCCTCCCACAAACCCAACCCAACCACCTCTGCTTCACCCTTCACGACCCCTTCACCACCAGTCCATTCCCGGGCAACGACTGGCCACTGCCCGACTCCGACTTTAGCCCCTCCTCTTACCAGCCCGTCACCGCCTTCATGGACACCGGCATCCCACACGACGACGCCGAACTCCCCCCACTACCACCCGACGCCTCTTCTTCCTACAACGACTGCGCCACCATGATCGATTGGTCCACTACCTCCTCCTCTTCCTCCTCCTTCATGGGCTTCGATTCCAACGCGGTTTTGCCGCCTTTCCCTGACACGGGCCATCCAAGATTGCGAACGCTTCCATTGATTTCACGCTCCAAGCTTGATGAATTGGTCTACACCCCGCGCAAATTAGAGAGCCTGACGAGTCGCGAATCAGCCACCCTATTCCAACCAGCAGCTAGCTCCTTCATCCCAGCTGCGTCTGCGTTCAGTTTCCATCAGGAAGATGGAGGGCTCCATTGGATCTGA 867 57.9 MDFSNSKNNSPSPSKPRRKHQEQQPQQQETTRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLSPLFPPTPAPTSLPQTQPNHLCFTLHDPFTTSPFPGNDWPLPDSDFSPSSYQPVTAFMDTGIPHDDAELPPLPPDASSSYNDCATMIDWSTTSSSSSSFMGFDSNAVLPPFPDTGHPRLRTLPLISRSKLDELVYTPRKLESLTSRESATLFQPAASSFIPAASAFSFHQEDGGLHWI 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27934080 27935940 - Maker00030820 Lcy11g0924 646825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0924 288 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 9 154 - -
Lcy11g0924 288 Gene3D AP2/ERF domain 31 90 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g0924 288 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g0924 288 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g0924 288 SMART rav1_2 32 95 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g0924 288 MobiDBLite consensus disorder prediction 1 38 - -
Lcy11g0924 288 Pfam AP2 domain 32 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g0924 288 SUPERFAMILY DNA-binding domain 33 90 IPR016177 GO:0003677(InterPro)
Lcy11g0924 288 FunFam Ethylene-responsive transcription factor 2 31 90 - -
Lcy11g0924 288 CDD AP2 31 88 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g0924 288 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0924 Lcy-Chr11:27934080 Lcy13g1747 Lcy-Chr13:36408360 2.66E-27 dispersed
Lcy10g1050 Lcy-Chr10:32639154 Lcy11g0924 Lcy-Chr11:27934080 4.57E-38 transposed
Lcy11g1434 Lcy-Chr11:38242334 Lcy11g0924 Lcy-Chr11:27934080 5.74E-31 transposed
Lcy11g0924 Lcy-Chr11:27934080 Lcy9g0587 Lcy-Chr9:19221192 2.81E-18 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19107 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0924 K09286 - csv:101205393 310.457