Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0965 ATGAAAACGACCAAGAAATTGCACGAAATGGATCCTCTTCAAAAGCCCAAACAAGATCGCTATGCTCTTAGAACTTCTCCTCAGTGGTTAGGTCCCCTGATTGAAGTGATTCGCTTCTCCACAAAGTCAATTGAGCGGGAGATTGATTCGGTCAATGACAACCCTTTGATCGATGTTTCAAGAAACAAGGCGTTGCATGGAGGCAATTTCCAAGGAACACCAATTGGAGTTTCCATGGACAACACTCGTTTGGCCATTGCATCAATTGGGAAACTCATGTTTGCCCAATTTTCAGAGCTTGTCAATGATTTCTACAATAACGGTTTGCCTTCTAATCTTTCTGCAAGTAGAAATCCGAGCTTGGACTATGGTTTCAAAGGTGCTGAGATTGCCATGGCTTCATACTGCTCTGAGCTCCAATATCTTGCAAATCCAGTGACAAGTCATGTTCAAAGTGCTGAGCAACACAACCAAGATGTTAACTCCCTTGGTTTAATTTCTTCAAGGAAAACAGCTGAAACCATTGATATTCTAAAACTCATGTCTTCCACATTTTTAGTTGCTCTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAAAACTTGAAGAACATTGTCAAAAACACAGTTAGCCAAGTAGCAAAAAAAGTGTTAACTACATCTTCTAACGGCACACTTCACCCATCAAGATTTTGCGAGAGAGATCTACTTAAAGTTGTAGACAGAGAATACACTTTTGCCTACATCGATGATCCATGCAGTGCTACATACCCATTGATGCAGAAGCTGAGGCAAGTTCTCGTTGAGCGTGCACTTGAAAATGGTGATAATGAGGTGAACACAAACACTTCAATCTTCCAAAAAATGGTTGCTTTTGAGGAGGAACTAAAAGCAGTATTACCAAAGGAGGTTGAAAATGTAAGATTAGCATATGAGAGCGGAAATTCTAAAATTGAAAATCAGATTAAGGATTGCAGATCTTACCCATTATACAAATTTGTGAGAGACGAACTGAGAACAAGATTGCTAACCGGAGAAAAGGTGATATCTCCAGGAGAAGAATGTGAAAAGGTATTTACAGCTTTGTGTCAAGGAAAGATGATCGACTCTATTTTTGAGTGCTTGAAGGAGTGGAATGGAGCTCCAATCCCTATTTGCTAA 1161 40.05 MKTTKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREIDSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAETIDILKLMSSTFLVALCQAIDLRHLEENLKNIVKNTVSQVAKKVLTTSSNGTLHPSRFCERDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVLVERALENGDNEVNTNTSIFQKMVAFEEELKAVLPKEVENVRLAYESGNSKIENQIKDCRSYPLYKFVRDELRTRLLTGEKVISPGEECEKVFTALCQGKMIDSIFECLKEWNGAPIPIC 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29298931 29300091 - Maker00030705 Lcy11g0965 646866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0965 386 Gene3D - 199 320 IPR023144 -
Lcy11g0965 386 PANTHER HISTIDINE AMMONIA-LYASE 1 386 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Lcy11g0965 386 FunFam Phenylalanine ammonia-lyase 199 320 - -
Lcy11g0965 386 Gene3D Fumarase/aspartase (Central domain) 1 381 - -
Lcy11g0965 386 Pfam Aromatic amino acid lyase 14 211 IPR001106 -
Lcy11g0965 386 NCBIfam phenylalanine ammonia-lyase 1 376 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Lcy11g0965 386 SUPERFAMILY L-aspartase-like 2 386 IPR008948 GO:0003824(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0965 Lcy-Chr11:29298931 Lcy11g0972 Lcy-Chr11:29415669 1.80E-260 dispersed
Lcy11g0965 Lcy-Chr11:29298931 Lcy11g0969 Lcy-Chr11:29375537 2.27E-256 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0965 K10775 - csv:101204574 729.169