Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0966 ATGGCAAAACAGCTTGCTGCTCACCAAAACAGTTCCCTGGAGAGCTTGTGCAGCAGCCGTCAGGACCCACTTAACTGGGGTGTGGCGGCTGAATCAATGAAGGGAAGTCATTTGGATGAGGTGAAGCGGATGGTGGAAGAGTATCGGAGGCCTGTGGTGAAGCTGGGAGGACAAACACTCACCATTTCCCAAGTCGCTGCTATTGCCACTCGTGATAATGATGTCGTGGTTGAATTGGTCGAGTCTGCGAGGGCTAGTGTCAAAGCCAGTAGTGATTGGGTGATGGAGAGCATGAGTAAAGGCACTGACAGTTATGGTGTCACTACTGGCTTTGGTGCCACTTCCCACAGAAGAACCAACCAAGGCGGTGCTCTTCAAAAGGAGCTCATTCGATTCTTGAATTCTGGCGTCTTCGGAAATGGGACTGAGTCAAGCCACACTTTGTCTCACTCTGCCACTAGAGCGGCCATGTTGGTGAGAATCAACACTCTCCTTCAAGGCTATTCTGGCATTAGATTCGAGATTTTGGAAGCGATTGCTAATCTCTTGAACCACAACGTCACTCCATGCTTGCCATTGCGTGGGACGATTACAGCTTCGGGAGATTTAGTCCCTTTGTCTTATATTGCGGGGCTACTCACAGGTCGTCATAACTCCAAGGCCATTGGACCCCATGGTGAAACCCTTGATGCAAAGGCTGCTTTTGAACAGGCTTGTATTGATTCTGGATTCTTTGAGTTGCAGCCTAAGGAAGGCCTTGCTCTTGTCAATGGCACTGCTGTTGGTTCTGGTTTAGCTTCCATTGTTCTCTTTGAGGCAAATATATTGGTTGTTTTGTCTGAAATTTTATCTGCCATTTTTGCTGAGGTGATGCAAGGAAAGCCTGAATTCACTGATCATTTGACCCATTAG 912 48.03 MAKQLAAHQNSSLESLCSSRQDPLNWGVAAESMKGSHLDEVKRMVEEYRRPVVKLGGQTLTISQVAAIATRDNDVVVELVESARASVKASSDWVMESMSKGTDSYGVTTGFGATSHRRTNQGGALQKELIRFLNSGVFGNGTESSHTLSHSATRAAMLVRINTLLQGYSGIRFEILEAIANLLNHNVTPCLPLRGTITASGDLVPLSYIAGLLTGRHNSKAIGPHGETLDAKAAFEQACIDSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILVVLSEILSAIFAEVMQGKPEFTDHLTH 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29300161 29301072 - Maker00030704 Lcy11g0966 646867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0966 303 SUPERFAMILY L-aspartase-like 22 303 IPR008948 GO:0003824(InterPro)
Lcy11g0966 303 FunFam Phenylalanine ammonia-lyase 13 259 - -
Lcy11g0966 303 Gene3D - 14 259 IPR024083 -
Lcy11g0966 303 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 195 211 IPR022313 GO:0016841(InterPro)
Lcy11g0966 303 Gene3D Fumarase/aspartase (Central domain) 260 303 - -
Lcy11g0966 303 PANTHER HISTIDINE AMMONIA-LYASE 19 303 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Lcy11g0966 303 Pfam Aromatic amino acid lyase 60 303 IPR001106 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0966 Lcy-Chr11:29300161 Lcy11g0971 Lcy-Chr11:29389415 1.46E-190 dispersed
Lcy11g0966 Lcy-Chr11:29300161 Lcy11g0969 Lcy-Chr11:29375537 1.17E-193 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0966 K10775 - csv:116401606 549.666