Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy11g0969 | ATGGCTCACCAAAATGGTTCGGTGGAGAGCTTGTGCACAAGCCATCAAGATCCACTGAATTGGGGTGTGGCGGCTGAGTCATTGAAGGGAAGTCATTTGGATGAGGTGAAGCGCATGGTGGAAGAGTATCGGAGGCCTGTGGTGAAGCTTGGAGGAGAGACTCTCACCATTTCCCAAGTCGCTGCCATTGCCACTCGTGATAATGATGTCATGGTTGAACTGGCTGAGTCTGCGAGAGCTGGTGTTAAAGCCAGTAGTGACTGGGTGATGGAGAGCATGAGTAAAGGCACTGACAGCTATGGTGTCACTACTGGCTTCGGTGCCACTTCCCACAGAAGAACCAACCAAGGTGGAGCTCTTCAAAAGGAGCTAATTCGGTTCTTGAATTCTGGCATCTTTGGGAATGGGACTGAGTCTAGCCACACTTTGCCTCACTCTGCCACTAGAGCAGCCATGTTGGTGAGAATCAACACTCTCCTTCAAGGCTATTCGGGTATTAGATTTGAGATTTTGGAAGCCATTGCCAATCTCTTAAACCACAACGTTACCCCATGTTTGCCACTTCGAGGAACAATTACAGCTTCAGGGGATTTGGTTCCTTTGTCTTACATTGCTGGACTACTTACAGGTCGTCATAATGCGAAAGCCATTGGACCTAATGGTGAAACCCTTGATGCAAAGGCTGCTTTTGAACAAGCTAGTATTGATTCCGGGTTCTTTGAATTGCAGCCTAAAGAAGGCCTTGCTCTTGTCAATGGCACTGCTGTTGGTTCTGGGTTAGCTTCAATTGTTCTTTTTGAAGCAAATATCTTAGTTGTTTTGTCTGAAGTTTTATCTGCCATTTTTGCTGAGGTAATGCAAGGAAAGCCTGAATTCACCGACCATTTGACCCATAAGTTGAAACACCATCCTGGTCAGATTGAAGCAGCTGCAATCATGGAGCACATTTTGGATGGAAGCTCTTACATGAAAACCGCCAAGAAATTGCATGAAATCGATCCTCTCCAAAAGCCAAAACAAGATCGTTACGCACTTAGAACTTCTCCCCAATGGCTTGGTCCCTTGATTGAAGTGATTCGGTTTTCCACGAAGTCAATTGAGCGAGAGATTAATTCAGTTAACGACAACCCTTTGATCGATGTTTCAAGAAACAAGGCATTGCATGGAGGCAACTTTCAAGGAACACCAATTGGAGTTTCTATGGACAACACTCGTTTGGCCATTGCCTCAATTGGAAAGCTCATGTTTGCCCAATTTTCAGAACTAGTCAATGATTTCTACAACAATGGTTTGCCTTCTAATCTTTCTGCAAGTAGAAACCCCAGCTTGGATTATGGGTTTAAAGGCACTGAGATTGCCATGGCATCATATTGTTCTGAGCTTCAATATCTTGCAAATCCGGTGACAAGTCATGTCCAGAGCGCCGAGCAACATAACCAAGATGTTAACTCTCTTGGTTTAATTTCTTCAAGAAAAACAGCTGAAGCCATTGACATTCTAAAACTCATGTCTTCCACATTTTTAGTTGCCCTTTGCCAAGCAATTGACTTGAGACATTTGGAGGAAAACTTGAAGAGTACGGTAAAAAACACAGTTAGTCAAGTAACAAAAAAAGTATTGACTACATCCTCTAATGGTGCACTTCACTTATCAAGATTTTGTGAGAAAGATCTGCTTAAAGTTGTTGACAGAGAATACACTTTTGCATACATCGATGATCCATGCAATGCTACGTACCCATTGATGCAGAAATTGAGGCAAGTCCTTGTTGAGCATGCTTTGGAAAATGGTAATAATGAAGTGAACTCAAACACTTCAATCTTCCAAAAGATTGGTGCTTTTGAAGAGGAATTAAAGGCAGTTCTACCCAAGGAGGTTGAAAATGTAAGGTTGACATATGAGAGTGGAAGCTCTAAAATTGAAAATCAGATTAAGGATTGTAGATCTTACCCATTATACAAATTTGTGAGAGAGGAGTTGGGAACAAGATTGCTAACTGGAGAAAGGGTGATATCTCCCGGAGAAGAGTGTGAGAAGGTATACTTAGCATTGTGTCAAGGAAAAATGATCAATTCTATCTTCGAATGCTTGAAGGGGTGGAATGGAGCTCCCATTCCTATTTGCTAA | 2127 | 42.64 | MAHQNGSVESLCTSHQDPLNWGVAAESLKGSHLDEVKRMVEEYRRPVVKLGGETLTISQVAAIATRDNDVMVELAESARAGVKASSDWVMESMSKGTDSYGVTTGFGATSHRRTNQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAIANLLNHNVTPCLPLRGTITASGDLVPLSYIAGLLTGRHNAKAIGPNGETLDAKAAFEQASIDSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILVVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGTEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKNTVSQVTKKVLTTSSNGALHLSRFCEKDLLKVVDREYTFAYIDDPCNATYPLMQKLRQVLVEHALENGNNEVNSNTSIFQKIGAFEEELKAVLPKEVENVRLTYESGSSKIENQIKDCRSYPLYKFVREELGTRLLTGERVISPGEECEKVYLALCQGKMINSIFECLKGWNGAPIPIC | 708 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 29375537 | 29377663 | + | Maker00030733 | Lcy11g0969 | 646870 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy11g0969 | 708 | Gene3D | - | 521 | 642 | IPR023144 | - | |
Lcy11g0969 | 708 | NCBIfam | phenylalanine ammonia-lyase | 17 | 698 | IPR005922 | GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro) | |
Lcy11g0969 | 708 | CDD | PAL-HAL | 53 | 518 | IPR001106 | - | |
Lcy11g0969 | 708 | Gene3D | - | 8 | 254 | IPR024083 | - | |
Lcy11g0969 | 708 | SUPERFAMILY | L-aspartase-like | 17 | 708 | IPR008948 | GO:0003824(InterPro) | |
Lcy11g0969 | 708 | PANTHER | HISTIDINE AMMONIA-LYASE | 14 | 708 | IPR001106 | GO:0016841(PANTHER)|GO:0045548(PANTHER) | |
Lcy11g0969 | 708 | FunFam | Phenylalanine ammonia-lyase | 8 | 254 | - | - | |
Lcy11g0969 | 708 | Pfam | Aromatic amino acid lyase | 55 | 533 | IPR001106 | - | |
Lcy11g0969 | 708 | ProSitePatterns | Phenylalanine and histidine ammonia-lyases signature. | 190 | 206 | IPR022313 | GO:0016841(InterPro) | |
Lcy11g0969 | 708 | Gene3D | Fumarase/aspartase (Central domain) | 255 | 703 | - | - | |
Lcy11g0969 | 708 | FunFam | Phenylalanine ammonia-lyase | 255 | 548 | - | - | |
Lcy11g0969 | 708 | FunFam | Phenylalanine ammonia-lyase | 521 | 642 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g0969 | Lcy-Chr11:29375537 | Lcy1g1356 | Lcy-Chr1:13128327 | 0 | dispersed | |
Lcy11g0965 | Lcy-Chr11:29298931 | Lcy11g0969 | Lcy-Chr11:29375537 | 2.27E-256 | proximal | |
Lcy11g0966 | Lcy-Chr11:29300161 | Lcy11g0969 | Lcy-Chr11:29375537 | 1.17E-193 | proximal | |
Lcy11g0969 | Lcy-Chr11:29375537 | Lcy11g0971 | Lcy-Chr11:29389415 | 0 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy11g0969 | K10775 | - | csv:116401606 | 1326.61 |