Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0969 ATGGCTCACCAAAATGGTTCGGTGGAGAGCTTGTGCACAAGCCATCAAGATCCACTGAATTGGGGTGTGGCGGCTGAGTCATTGAAGGGAAGTCATTTGGATGAGGTGAAGCGCATGGTGGAAGAGTATCGGAGGCCTGTGGTGAAGCTTGGAGGAGAGACTCTCACCATTTCCCAAGTCGCTGCCATTGCCACTCGTGATAATGATGTCATGGTTGAACTGGCTGAGTCTGCGAGAGCTGGTGTTAAAGCCAGTAGTGACTGGGTGATGGAGAGCATGAGTAAAGGCACTGACAGCTATGGTGTCACTACTGGCTTCGGTGCCACTTCCCACAGAAGAACCAACCAAGGTGGAGCTCTTCAAAAGGAGCTAATTCGGTTCTTGAATTCTGGCATCTTTGGGAATGGGACTGAGTCTAGCCACACTTTGCCTCACTCTGCCACTAGAGCAGCCATGTTGGTGAGAATCAACACTCTCCTTCAAGGCTATTCGGGTATTAGATTTGAGATTTTGGAAGCCATTGCCAATCTCTTAAACCACAACGTTACCCCATGTTTGCCACTTCGAGGAACAATTACAGCTTCAGGGGATTTGGTTCCTTTGTCTTACATTGCTGGACTACTTACAGGTCGTCATAATGCGAAAGCCATTGGACCTAATGGTGAAACCCTTGATGCAAAGGCTGCTTTTGAACAAGCTAGTATTGATTCCGGGTTCTTTGAATTGCAGCCTAAAGAAGGCCTTGCTCTTGTCAATGGCACTGCTGTTGGTTCTGGGTTAGCTTCAATTGTTCTTTTTGAAGCAAATATCTTAGTTGTTTTGTCTGAAGTTTTATCTGCCATTTTTGCTGAGGTAATGCAAGGAAAGCCTGAATTCACCGACCATTTGACCCATAAGTTGAAACACCATCCTGGTCAGATTGAAGCAGCTGCAATCATGGAGCACATTTTGGATGGAAGCTCTTACATGAAAACCGCCAAGAAATTGCATGAAATCGATCCTCTCCAAAAGCCAAAACAAGATCGTTACGCACTTAGAACTTCTCCCCAATGGCTTGGTCCCTTGATTGAAGTGATTCGGTTTTCCACGAAGTCAATTGAGCGAGAGATTAATTCAGTTAACGACAACCCTTTGATCGATGTTTCAAGAAACAAGGCATTGCATGGAGGCAACTTTCAAGGAACACCAATTGGAGTTTCTATGGACAACACTCGTTTGGCCATTGCCTCAATTGGAAAGCTCATGTTTGCCCAATTTTCAGAACTAGTCAATGATTTCTACAACAATGGTTTGCCTTCTAATCTTTCTGCAAGTAGAAACCCCAGCTTGGATTATGGGTTTAAAGGCACTGAGATTGCCATGGCATCATATTGTTCTGAGCTTCAATATCTTGCAAATCCGGTGACAAGTCATGTCCAGAGCGCCGAGCAACATAACCAAGATGTTAACTCTCTTGGTTTAATTTCTTCAAGAAAAACAGCTGAAGCCATTGACATTCTAAAACTCATGTCTTCCACATTTTTAGTTGCCCTTTGCCAAGCAATTGACTTGAGACATTTGGAGGAAAACTTGAAGAGTACGGTAAAAAACACAGTTAGTCAAGTAACAAAAAAAGTATTGACTACATCCTCTAATGGTGCACTTCACTTATCAAGATTTTGTGAGAAAGATCTGCTTAAAGTTGTTGACAGAGAATACACTTTTGCATACATCGATGATCCATGCAATGCTACGTACCCATTGATGCAGAAATTGAGGCAAGTCCTTGTTGAGCATGCTTTGGAAAATGGTAATAATGAAGTGAACTCAAACACTTCAATCTTCCAAAAGATTGGTGCTTTTGAAGAGGAATTAAAGGCAGTTCTACCCAAGGAGGTTGAAAATGTAAGGTTGACATATGAGAGTGGAAGCTCTAAAATTGAAAATCAGATTAAGGATTGTAGATCTTACCCATTATACAAATTTGTGAGAGAGGAGTTGGGAACAAGATTGCTAACTGGAGAAAGGGTGATATCTCCCGGAGAAGAGTGTGAGAAGGTATACTTAGCATTGTGTCAAGGAAAAATGATCAATTCTATCTTCGAATGCTTGAAGGGGTGGAATGGAGCTCCCATTCCTATTTGCTAA 2127 42.64 MAHQNGSVESLCTSHQDPLNWGVAAESLKGSHLDEVKRMVEEYRRPVVKLGGETLTISQVAAIATRDNDVMVELAESARAGVKASSDWVMESMSKGTDSYGVTTGFGATSHRRTNQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAIANLLNHNVTPCLPLRGTITASGDLVPLSYIAGLLTGRHNAKAIGPNGETLDAKAAFEQASIDSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILVVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGTEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKNTVSQVTKKVLTTSSNGALHLSRFCEKDLLKVVDREYTFAYIDDPCNATYPLMQKLRQVLVEHALENGNNEVNSNTSIFQKIGAFEEELKAVLPKEVENVRLTYESGSSKIENQIKDCRSYPLYKFVREELGTRLLTGERVISPGEECEKVYLALCQGKMINSIFECLKGWNGAPIPIC 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29375537 29377663 + Maker00030733 Lcy11g0969 646870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0969 708 Gene3D - 521 642 IPR023144 -
Lcy11g0969 708 NCBIfam phenylalanine ammonia-lyase 17 698 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Lcy11g0969 708 CDD PAL-HAL 53 518 IPR001106 -
Lcy11g0969 708 Gene3D - 8 254 IPR024083 -
Lcy11g0969 708 SUPERFAMILY L-aspartase-like 17 708 IPR008948 GO:0003824(InterPro)
Lcy11g0969 708 PANTHER HISTIDINE AMMONIA-LYASE 14 708 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Lcy11g0969 708 FunFam Phenylalanine ammonia-lyase 8 254 - -
Lcy11g0969 708 Pfam Aromatic amino acid lyase 55 533 IPR001106 -
Lcy11g0969 708 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 190 206 IPR022313 GO:0016841(InterPro)
Lcy11g0969 708 Gene3D Fumarase/aspartase (Central domain) 255 703 - -
Lcy11g0969 708 FunFam Phenylalanine ammonia-lyase 255 548 - -
Lcy11g0969 708 FunFam Phenylalanine ammonia-lyase 521 642 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0969 Lcy-Chr11:29375537 Lcy1g1356 Lcy-Chr1:13128327 0 dispersed
Lcy11g0965 Lcy-Chr11:29298931 Lcy11g0969 Lcy-Chr11:29375537 2.27E-256 proximal
Lcy11g0966 Lcy-Chr11:29300161 Lcy11g0969 Lcy-Chr11:29375537 1.17E-193 proximal
Lcy11g0969 Lcy-Chr11:29375537 Lcy11g0971 Lcy-Chr11:29389415 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0969 K10775 - csv:116401606 1326.61