Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy11g0971 | ATGGCACAACAGCTTGCTGCTCACCAAAATGGTTCATTAGAAAGCTTGTGTACGAGCCATCAGGATCCTCTCAACTGGGGTGTGGCGGCTGAAGCACTCAAGGGCAGTCATCTGGATGAGGTGAAGCAGATGGTGGAAGAGTATAGAAGGCCTGTGGTGAAGCTTGGAGGAGAGACTCTCACCATTTCTCAAGTCGCTGCCATTGCCACTCGTGATAATGATGTCTTGGTTGAATTGGCCGAGTCTGCGAGGGCTGGTGTCAAAGCGAGCAGTGATTGGGTGATGGACAGCATGAGTAAAGGCACTGATAGCTATGGTGTCACTACTGGCTTTGGTGCTACTTCCCATAGAAGAACCAACCAAGGTGAAGCTCTTCAAAAGGAGCTAATCCGATTCTTGAATGCCGGCATCTTTGGAAGTGGGACTGAATCAAGTCACACTTTGCCTCACTCTGCTACGAGAGCGGCTATGTTGGTGAGAATCAACACTCTTCTTCAGGGCTATTCGGGGATTAGATTCGAGATTTTGGAAGCCATTGCTAATCTCTTGAATCACAACATCACTCCATGTTTGCCGTTGCGAGGGACAATTACAGCTTCTGGGGATTTGGTTCCTTTGTCTTATATTGCTGGGCTACTCACGGGTCGTCATAATTCGAAAGCTATTGGACCCACTGGAGAAACCCTTGATGCAAAGGCTGCTTTTAAACAAGCTGGTATTGATTCTGGGTTCTTTAAGTTGCAACCTAAGGAAGGCCTCGCTCTTGTAAATGGCACCGCGGTCGGTTCTGGCTTGGCTTCCACGGTTCTCTTTGAGGCAAATATTTTGGCTGTTTTATCTGAAATTCTATCTGCCATTTTTGCTGAGGTGATGCAAGGAAAGCCTGAATTCACAGACCATTTGACTCATAAGTTGAAACACCATCCTGGTCAAATTGAAGCAGCTGCAATCATGGAGCACATTTTGGATGGAAGCTCATACATGAAAACAGCCAAGAAATTGCACGAAATGGATCCTCTCCAAAAGCCCAAACAAGATCGTTATGCTCTTAGAACTTCTCCTCAATGGTTGGGTCCTTTAATTGAAGTCATTCGATTCTCCACTAAGTCAATCGAGCGGGAGATTAATTCAGTCAACGATAACCCTTTGATTGATGTTTCGAGAAACAAGGCATTGCATGGAGGCAACTTCCAAGGAACACCGATTGGAGTTTCCATGGACAACACTCGTTTGGCCATTGCGTCAATTGGAAAGCTCATGTTTGCCCAATTTTCAGAACTAGTCAATGATTTCTACAACAACGGTTTGCCTTCTAATCTTTCTGCAAGTAGAAACCCTAGCTTAGATTATGGGTTTAAAGGCACTGAGATTGCTATGGCTTCATATTGCTCCGAGCTTCAATATCTTGCAAATCCAGTGACAAGTCATGTTCAGAGTGCTGAGCAACACAACCAAGATGTTAACTCTCTTGGTTTAATTTCTTCAAGGAAAACAGCTGAAGCCATCGATATCCTAAAACTCATGTCTTCCACATTTTTAGTTGCTCTTTGCCAAGCAATTGACTTACGACATTTGGAGGAAAACTTGAAGAGCACCGTTAAAAACACAGTCAGCCAAATAGCAAAAAAAGTGTTGACCACATCTTCTACCGGCGCACTTCACCCATCAAGATTTTGCGAGAAAGATCTACTTAAAGTTGTTGACAGAGAATATACCTTTGCATACATCGATGATCCATGCAACACTACTTATCCATTGATGCAGAAGTTGAGGCAAGTTCTCGTTCAACATGCACTTGAAAATGGTGATGATGAAAAGAACACAAACACTTCAATCTTCCAAAAGATCAACACTTTTGAGGAGGAATTAAAGACAATTTTACCAAAGGAGGTTGAAAATGTGAGGTTGGAATATGAGAGCGGAAATTCTACGATTGAAAATCAAATTAAGGATTGCAGATCTTATCCATTATATAGATTTGTCAGAGAGGAGTTGGGAACAAAATTGCTAACGGGAGAAAAGGTGATATCTCCTGGAGAAGAGTGCGAGAAGGTGTTCACTGCTTTGTCTCAAGGAAAGATGATTGACTCTATCTTCGAGTGCCTTAAGGAGTGGAATGGAGCTCCAATCCCAATTTGCTAA | 2142 | 43.23 | MAQQLAAHQNGSLESLCTSHQDPLNWGVAAEALKGSHLDEVKQMVEEYRRPVVKLGGETLTISQVAAIATRDNDVLVELAESARAGVKASSDWVMDSMSKGTDSYGVTTGFGATSHRRTNQGEALQKELIRFLNAGIFGSGTESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAIANLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRHNSKAIGPTGETLDAKAAFKQAGIDSGFFKLQPKEGLALVNGTAVGSGLASTVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGTEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKNTVSQIAKKVLTTSSTGALHPSRFCEKDLLKVVDREYTFAYIDDPCNTTYPLMQKLRQVLVQHALENGDDEKNTNTSIFQKINTFEEELKTILPKEVENVRLEYESGNSTIENQIKDCRSYPLYRFVREELGTKLLTGEKVISPGEECEKVFTALSQGKMIDSIFECLKEWNGAPIPIC | 713 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 29389415 | 29391556 | + | Maker00030731 | Lcy11g0971 | 646872 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy11g0971 | 713 | Gene3D | Fumarase/aspartase (Central domain) | 260 | 708 | - | - | |
Lcy11g0971 | 713 | CDD | PAL-HAL | 58 | 523 | IPR001106 | - | |
Lcy11g0971 | 713 | FunFam | Phenylalanine ammonia-lyase | 260 | 566 | - | - | |
Lcy11g0971 | 713 | Pfam | Aromatic amino acid lyase | 60 | 538 | IPR001106 | - | |
Lcy11g0971 | 713 | SUPERFAMILY | L-aspartase-like | 22 | 713 | IPR008948 | GO:0003824(InterPro) | |
Lcy11g0971 | 713 | ProSitePatterns | Phenylalanine and histidine ammonia-lyases signature. | 195 | 211 | IPR022313 | GO:0016841(InterPro) | |
Lcy11g0971 | 713 | FunFam | Phenylalanine ammonia-lyase | 526 | 647 | - | - | |
Lcy11g0971 | 713 | Gene3D | - | 526 | 647 | IPR023144 | - | |
Lcy11g0971 | 713 | Gene3D | - | 14 | 259 | IPR024083 | - | |
Lcy11g0971 | 713 | FunFam | Phenylalanine ammonia-lyase | 13 | 259 | - | - | |
Lcy11g0971 | 713 | NCBIfam | phenylalanine ammonia-lyase | 22 | 703 | IPR005922 | GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro) | |
Lcy11g0971 | 713 | PANTHER | HISTIDINE AMMONIA-LYASE | 19 | 713 | IPR001106 | GO:0016841(PANTHER)|GO:0045548(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g0966 | Lcy-Chr11:29300161 | Lcy11g0971 | Lcy-Chr11:29389415 | 1.46E-190 | dispersed | |
Lcy11g0971 | Lcy-Chr11:29389415 | Lcy13g1039 | Lcy-Chr13:22711472 | 0 | dispersed | |
Lcy11g0969 | Lcy-Chr11:29375537 | Lcy11g0971 | Lcy-Chr11:29389415 | 0 | proximal | |
Lcy11g0971 | Lcy-Chr11:29389415 | Lcy11g0972 | Lcy-Chr11:29415669 | 0 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy11g0971 | K10775 | - | csv:101204574 | 1328.15 |