Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0971 ATGGCACAACAGCTTGCTGCTCACCAAAATGGTTCATTAGAAAGCTTGTGTACGAGCCATCAGGATCCTCTCAACTGGGGTGTGGCGGCTGAAGCACTCAAGGGCAGTCATCTGGATGAGGTGAAGCAGATGGTGGAAGAGTATAGAAGGCCTGTGGTGAAGCTTGGAGGAGAGACTCTCACCATTTCTCAAGTCGCTGCCATTGCCACTCGTGATAATGATGTCTTGGTTGAATTGGCCGAGTCTGCGAGGGCTGGTGTCAAAGCGAGCAGTGATTGGGTGATGGACAGCATGAGTAAAGGCACTGATAGCTATGGTGTCACTACTGGCTTTGGTGCTACTTCCCATAGAAGAACCAACCAAGGTGAAGCTCTTCAAAAGGAGCTAATCCGATTCTTGAATGCCGGCATCTTTGGAAGTGGGACTGAATCAAGTCACACTTTGCCTCACTCTGCTACGAGAGCGGCTATGTTGGTGAGAATCAACACTCTTCTTCAGGGCTATTCGGGGATTAGATTCGAGATTTTGGAAGCCATTGCTAATCTCTTGAATCACAACATCACTCCATGTTTGCCGTTGCGAGGGACAATTACAGCTTCTGGGGATTTGGTTCCTTTGTCTTATATTGCTGGGCTACTCACGGGTCGTCATAATTCGAAAGCTATTGGACCCACTGGAGAAACCCTTGATGCAAAGGCTGCTTTTAAACAAGCTGGTATTGATTCTGGGTTCTTTAAGTTGCAACCTAAGGAAGGCCTCGCTCTTGTAAATGGCACCGCGGTCGGTTCTGGCTTGGCTTCCACGGTTCTCTTTGAGGCAAATATTTTGGCTGTTTTATCTGAAATTCTATCTGCCATTTTTGCTGAGGTGATGCAAGGAAAGCCTGAATTCACAGACCATTTGACTCATAAGTTGAAACACCATCCTGGTCAAATTGAAGCAGCTGCAATCATGGAGCACATTTTGGATGGAAGCTCATACATGAAAACAGCCAAGAAATTGCACGAAATGGATCCTCTCCAAAAGCCCAAACAAGATCGTTATGCTCTTAGAACTTCTCCTCAATGGTTGGGTCCTTTAATTGAAGTCATTCGATTCTCCACTAAGTCAATCGAGCGGGAGATTAATTCAGTCAACGATAACCCTTTGATTGATGTTTCGAGAAACAAGGCATTGCATGGAGGCAACTTCCAAGGAACACCGATTGGAGTTTCCATGGACAACACTCGTTTGGCCATTGCGTCAATTGGAAAGCTCATGTTTGCCCAATTTTCAGAACTAGTCAATGATTTCTACAACAACGGTTTGCCTTCTAATCTTTCTGCAAGTAGAAACCCTAGCTTAGATTATGGGTTTAAAGGCACTGAGATTGCTATGGCTTCATATTGCTCCGAGCTTCAATATCTTGCAAATCCAGTGACAAGTCATGTTCAGAGTGCTGAGCAACACAACCAAGATGTTAACTCTCTTGGTTTAATTTCTTCAAGGAAAACAGCTGAAGCCATCGATATCCTAAAACTCATGTCTTCCACATTTTTAGTTGCTCTTTGCCAAGCAATTGACTTACGACATTTGGAGGAAAACTTGAAGAGCACCGTTAAAAACACAGTCAGCCAAATAGCAAAAAAAGTGTTGACCACATCTTCTACCGGCGCACTTCACCCATCAAGATTTTGCGAGAAAGATCTACTTAAAGTTGTTGACAGAGAATATACCTTTGCATACATCGATGATCCATGCAACACTACTTATCCATTGATGCAGAAGTTGAGGCAAGTTCTCGTTCAACATGCACTTGAAAATGGTGATGATGAAAAGAACACAAACACTTCAATCTTCCAAAAGATCAACACTTTTGAGGAGGAATTAAAGACAATTTTACCAAAGGAGGTTGAAAATGTGAGGTTGGAATATGAGAGCGGAAATTCTACGATTGAAAATCAAATTAAGGATTGCAGATCTTATCCATTATATAGATTTGTCAGAGAGGAGTTGGGAACAAAATTGCTAACGGGAGAAAAGGTGATATCTCCTGGAGAAGAGTGCGAGAAGGTGTTCACTGCTTTGTCTCAAGGAAAGATGATTGACTCTATCTTCGAGTGCCTTAAGGAGTGGAATGGAGCTCCAATCCCAATTTGCTAA 2142 43.23 MAQQLAAHQNGSLESLCTSHQDPLNWGVAAEALKGSHLDEVKQMVEEYRRPVVKLGGETLTISQVAAIATRDNDVLVELAESARAGVKASSDWVMDSMSKGTDSYGVTTGFGATSHRRTNQGEALQKELIRFLNAGIFGSGTESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAIANLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRHNSKAIGPTGETLDAKAAFKQAGIDSGFFKLQPKEGLALVNGTAVGSGLASTVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGTEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKNTVSQIAKKVLTTSSTGALHPSRFCEKDLLKVVDREYTFAYIDDPCNTTYPLMQKLRQVLVQHALENGDDEKNTNTSIFQKINTFEEELKTILPKEVENVRLEYESGNSTIENQIKDCRSYPLYRFVREELGTKLLTGEKVISPGEECEKVFTALSQGKMIDSIFECLKEWNGAPIPIC 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29389415 29391556 + Maker00030731 Lcy11g0971 646872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0971 713 Gene3D Fumarase/aspartase (Central domain) 260 708 - -
Lcy11g0971 713 CDD PAL-HAL 58 523 IPR001106 -
Lcy11g0971 713 FunFam Phenylalanine ammonia-lyase 260 566 - -
Lcy11g0971 713 Pfam Aromatic amino acid lyase 60 538 IPR001106 -
Lcy11g0971 713 SUPERFAMILY L-aspartase-like 22 713 IPR008948 GO:0003824(InterPro)
Lcy11g0971 713 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 195 211 IPR022313 GO:0016841(InterPro)
Lcy11g0971 713 FunFam Phenylalanine ammonia-lyase 526 647 - -
Lcy11g0971 713 Gene3D - 526 647 IPR023144 -
Lcy11g0971 713 Gene3D - 14 259 IPR024083 -
Lcy11g0971 713 FunFam Phenylalanine ammonia-lyase 13 259 - -
Lcy11g0971 713 NCBIfam phenylalanine ammonia-lyase 22 703 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Lcy11g0971 713 PANTHER HISTIDINE AMMONIA-LYASE 19 713 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0966 Lcy-Chr11:29300161 Lcy11g0971 Lcy-Chr11:29389415 1.46E-190 dispersed
Lcy11g0971 Lcy-Chr11:29389415 Lcy13g1039 Lcy-Chr13:22711472 0 dispersed
Lcy11g0969 Lcy-Chr11:29375537 Lcy11g0971 Lcy-Chr11:29389415 0 proximal
Lcy11g0971 Lcy-Chr11:29389415 Lcy11g0972 Lcy-Chr11:29415669 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0971 K10775 - csv:101204574 1328.15