Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0972 ATGGTGGAAGAGTATCGAAGGCCTGTGGTGAAGCTTGGAGGAGAAACTCTCACCATTTCCCAAGTCACTGCTATTGCCACTCGTGATAATGATGTCGTAGTTGAATTGGTTGAGTTTGCGAGGGCTGGTGTCAAAGCCAGTGGTGCTCTTCAGAAGGAGTTGATCCGATTCTTGAATTCTGGCATTTTTGGAAATGGAACTGAATCAAGTCACACTTTGCCTCACTCTGCTACACGAGCGGCCATGTTGGTGAGAATCAACACTCTCCTTCAAGGCTATTCGGGCATTAGATTCGAGATTTTAGAAGCCATTGCTAATCTCTTGAATCACAACGTCACTCCATGTTTGCCATTGCGAGGGACAATTACAGCTTCTGGGGATTTGGTTCCTTTGTCTTATATTGTTGGGCTACTCACCGGTCGTCATAATTCAAAAGCCATTGGACCCGATGGCAAAACACTTGATGCAGAGGCTGCTTTTGAACAAGCTAGTATTGGTTCTGGCTTCTTTGAGTTGCAACCAAAAGAAGGTCTTGCTCTTGTCAATGGCACTGCTGTTGGTTCTGGATTGGCTTCTATTGTTCTATTCGAGGCAAATATTTTGGCTATTCTGTCTGAAATTCTATCTGCCATTTTTGCTGAGGTTATGCAAGGAAAGCCTGAATTCACCGACCATTTGACCCATAAGTTGAAGCACCACCCATGTCAAATTGAAGCAGCTGCAATCATGGAGCACATTTTGGATGGAAGCTCCTATATGAAAACGGCCAAGAAATTGCATGAAATGGATCCCCTCCAAAAGCCCAAACAAGATCGTTATGCTCTTAGAACCTCTCCTCAGTGGTTAGGGCCCTTGATTGAAGTGATTCGCTTCTCCACAAAGTCAATCGAGCGGGAGATTAATTCAGTCAATGACAACCCTTTGATCGATGTTTCAAGAAACAAGGCGTTGCATGGAGGCAACTTCCAAGGAACACCAATTGGTGTTTCCATGGACAACACTCGTTTGGCCATTGCATCAATTGGGAAACTCATGTTTGCTCAATTTTCAGAACTTGTCAATGATTTTTACAATAATGGTTTGCCTTCTAATCTGTCTGCAAGTAGAAACCCAAGCTTGGATTATGGGTTCAAAGGTGCTGAGATTGCAATGGCTTCATACTGCTCTGAGCTTCAATATCTTGCGAATCCAGTGACAAGTCATGTCCAAAGTGCCGAACAACACAACCAAGATGTTAACTCTCTTGATTTAATTTCTTCAAGGAAAACAGCTGAAGCCATCGATATTCTAAAGCTAATGTCTTCCACATTTTTAGTTGCTCTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAAAACTTGAAGAGCACGGTAAAAAACACAGTTAGCCAAGTAGCAAAAAAGGTGTTGACTACATCCTCTAATGGTGCACTGCACCCGTCGAGATTTTGTGAGAAAGATCTACTTAAAGTTGTTGAGAGAGAATACATCTTTGCATACATCGATGATCCATGCAGTGCTACGTATCCATTAATGCAGAAATTGAGGCAAGTCCTGGTTGAGCATGCACTTGAAAATGGTAATGGTGAAATGAACTCAAACACTTCAATCTTTCAAAAGATTGGTGTTTTTGAGGATGAACTAAAGAGAGTTCTACCAAAGGAGGTTGAAAATGTAAGGTTGGCATATGAGAGCGGAAACTCTAAAATTGAAAATCAGATTAAAGATTGCAGATCTTACCCACTATACAAATTTGTGAGAGAGGAGTTGGGAACAAGATTGCTTACCGGAGAAAAGGTGATATCTCCAGGAGAAGAGTGTGAGAAGGTATTCACAGCGTTGTGTCAAGGAAAGATGATTGACTCTATCTTCGAGTGCTTGAAGGAGTGGAATGGAGCTCCAATCCCTATTTGCTAA 1917 42.2 MVEEYRRPVVKLGGETLTISQVTAIATRDNDVVVELVEFARAGVKASGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAIANLLNHNVTPCLPLRGTITASGDLVPLSYIVGLLTGRHNSKAIGPDGKTLDAEAAFEQASIGSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAILSEILSAIFAEVMQGKPEFTDHLTHKLKHHPCQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLDLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKNTVSQVAKKVLTTSSNGALHPSRFCEKDLLKVVEREYIFAYIDDPCSATYPLMQKLRQVLVEHALENGNGEMNSNTSIFQKIGVFEDELKRVLPKEVENVRLAYESGNSKIENQIKDCRSYPLYKFVREELGTRLLTGEKVISPGEECEKVFTALCQGKMIDSIFECLKEWNGAPIPIC 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29415669 29417679 + Maker00030758 Lcy11g0972 646873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0972 638 Gene3D - 451 572 IPR023144 -
Lcy11g0972 638 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 120 136 IPR022313 GO:0016841(InterPro)
Lcy11g0972 638 Gene3D - 39 184 IPR024083 -
Lcy11g0972 638 PANTHER HISTIDINE AMMONIA-LYASE 1 47 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Lcy11g0972 638 SUPERFAMILY L-aspartase-like 2 638 IPR008948 GO:0003824(InterPro)
Lcy11g0972 638 FunFam Phenylalanine ammonia-lyase 185 497 - -
Lcy11g0972 638 CDD PAL-HAL 15 448 IPR001106 -
Lcy11g0972 638 FunFam Phenylalanine ammonia-lyase 451 572 - -
Lcy11g0972 638 Gene3D Fumarase/aspartase (Central domain) 185 633 - -
Lcy11g0972 638 Pfam Aromatic amino acid lyase 45 463 IPR001106 -
Lcy11g0972 638 NCBIfam phenylalanine ammonia-lyase 46 628 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0965 Lcy-Chr11:29298931 Lcy11g0972 Lcy-Chr11:29415669 1.80E-260 dispersed
Lcy11g0972 Lcy-Chr11:29415669 Lcy4g0292 Lcy-Chr4:3572410 0 dispersed
Lcy11g0971 Lcy-Chr11:29389415 Lcy11g0972 Lcy-Chr11:29415669 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0972 K10775 - csv:101204574 1162.52