Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1001 ATGCAGATGATGATCTCCAAGGCCTCCTCGGCCATGGCCTCTTTGCCTTGCACCAGGGTGAGGAGCGTATGTGTCTGGCCGAGCGTGAAACAACTTTCTTTCAGAAAAGACCTTTTATATGGGGTTATGCGACTCTTATCTACACCGTTGAAAACATTGCGTGGAGCTAGTCGTTCGCTTAAGGTTGCTCAGTTTTGCAGCGTGGTCAATATGTCCTCCACGTTGCAAATTGAACTGGTACCTTGTCTTCGTGACAACTATGCATACCTCTTACATGATGTTGATACGGGCACAGTTGGTGTTGTTGATCCTTCTGAAGCTCTACCAGTTATAGATGCTTTAAGCAAGAAAAACAGAAATTTGACATATATACTTAATACTCATCATCATCATGATCACACGGGTGGAAATGAAGAATTAAAAGCAAGGTATGGAGCGAAGGTGATTGGCTCTGGAATAGATAGTGACAGAATTCCAGGAATTGACATAACTTTAAAAGATGGAGACAAGTGGATGTTTGCTGGGCATGAAGTGCATGTAATGGAAACTCCTGGTCATACTCGAGGTCACATTAGCTTCTATTTTCCTGGATCAGCAGCAATATTTACTGGTGATACTTTATTCAGCTTATCTTGTGGCAAGCTTTTTGAAGGAACTCCTGAACAGGTTTATAGGAAGCAGTCTTTTGTTAACTTTAATGATATTCAGTCTGCTTTTGAAGTCATTTCACAGCTTAAGATTGATGGAGATAAGAGTTCTTTGATTGATAGGGTAGCAGGGTGGTTATTTTATTTGCATCATTCTAATGGTTTTGCATGCGTGATACAGATGCTTTCTTCCCTTAAAAAGATCACTTCTTTGCCAGATGATACAAACATATTTTGCGGTCATGAGTACACTTTGAGTAATTCTAAGTTTGCTTTGTCCATTGAACCTAAGAACGAGGCTCTCAAATCTTATGCAACCCAGGTTGCTAATCTACGAAGCAAGGGCTTGCCAACGATTCCATCAACATTAAAGATAGAGAAAATGTGCAATCCTTTCCTCCGTACTTCAAGTTCAGAAATTCGGCAGTCGTTAAAAGTTCGAAATACAGCAGATGATGCAGAGGTCTTGGGTATCATTCGGAAAGCTAAGGATAAATTTTAG 1149 40.47 MQMMISKASSAMASLPCTRVRSVCVWPSVKQLSFRKDLLYGVMRLLSTPLKTLRGASRSLKVAQFCSVVNMSSTLQIELVPCLRDNYAYLLHDVDTGTVGVVDPSEALPVIDALSKKNRNLTYILNTHHHHDHTGGNEELKARYGAKVIGSGIDSDRIPGIDITLKDGDKWMFAGHEVHVMETPGHTRGHISFYFPGSAAIFTGDTLFSLSCGKLFEGTPEQVYRKQSFVNFNDIQSAFEVISQLKIDGDKSSLIDRVAGWLFYLHHSNGFACVIQMLSSLKKITSLPDDTNIFCGHEYTLSNSKFALSIEPKNEALKSYATQVANLRSKGLPTIPSTLKIEKMCNPFLRTSSSEIRQSLKVRNTADDAEVLGIIRKAKDKF 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30441704 30449276 + Maker00030890 Lcy11g1001 646902

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1001 382 Pfam Hydroxyacylglutathione hydrolase C-terminus 298 382 IPR032282 -
Lcy11g1001 382 Gene3D - 267 382 IPR036866 -
Lcy11g1001 382 Gene3D - 75 237 IPR036866 -
Lcy11g1001 382 PANTHER HYDROXYACYLGLUTATHIONE HYDROLASE 75 226 IPR050110 -
Lcy11g1001 382 SUPERFAMILY Metallo-hydrolase/oxidoreductase 75 382 IPR036866 -
Lcy11g1001 382 CDD hydroxyacylglutathione_hydrolase_MBL-fold 80 297 IPR035680 -
Lcy11g1001 382 Pfam Metallo-beta-lactamase superfamily 88 217 IPR001279 -
Lcy11g1001 382 Hamap Hydroxyacylglutathione hydrolase [gloB]. 75 382 IPR017782 GO:0004416(InterPro)|GO:0019243(InterPro)
Lcy11g1001 382 SMART Lactamase_B_5a 85 245 IPR001279 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1001 K01069 - - csv:101223148 574.318
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1001 Lcy-Chr11:30441704 Lcy7g1097 Lcy-Chr7:11796742 2.59E-47 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1275 . . . . . Bpe14g01061 . . . . Cma06g01708 Cma14g01412 . Car14g01242 Sed02g0960 . . Bhi01g03727 Tan10g1384 Cmetu07g1769 . . . Lcy11g1001 . . . . . . . . . . . . . . Cme07g01973 Blo02g00447 Blo07g00115 Bda11g00477 Bda13g00253 . . Bma02g00969 Bma06g01440 . . Cmo14g01447 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006291 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38