Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1016 ATGGAAAACCCATTTTCGTCCAAGGAAGAAGGGATTGGATATTGGGGGCCTCCGAGAACTCAGGCTGAAACTATAACTTCTACTGACGCTGGAATGAGGGTTTTGAGTCCTGAAGATGTGCTCCACAGCTTTTCAGAGCTGATGAATTTTGACTCTTATGCGGGATGGGGCAATAACAATAATTGTGCAACAATTGATCAGATTTTCACGTCTTGTGGCTTTTCATCGATTCCGCCAATGAGTACTTGCGCTTCTATGGAGGGCTCGACTTTCCTAGAAGGGGGGAGCTATGAAGGATTCCCTCTGAATGAACATGGTGGTGCTTCCATTTCCATGGCAAATTCTTTCACTTGCGGGGACAAGGTGATGTTTCAGCAGCCAGACGCTGAATTTGGGGTATCTGATGTTTCAGACAACGCAAATGAAGCAGGTCAAAAATCAAATGATGTCGTTCTAGACATGGATAGTTGTCTAGTTTCTAGGCCGCTGGGTTGGTCACTTGATGAGAGAATGCTGAGGGCACTGTCCTTGTTTAAAGAGTCTTCACCTGGAGGTATTTTGGCTCAAGTCTGGGTGCCTGTGAAGGAAGGAGACAAATTCTTCTTGAGCACCAGCGAGCAGCCATATTTGCTTGATCAAATGCTCACAGGGTACCGTGAAGTGTCGAGGACGTTTACTTTCTCAGCAGAAGGGAAACTGGGTTCTCTCCTTGGGCTCCCTGGTCGTGTTTTCACCACCAAACTTCCAGAATGGACATCAAATGTTAGGTATTACAGTGAGAATGAGTATTTGAGAATGGAACATGCAATCGGTCATGAGGTTTATGGATCGGTTGCCTTACCAGTATTCAATAACGAACTTGGAAGCTCATGTTGTGCCGTACTTGAAGTTGTTACTACAAAGGAGAAGCCCAATTTTGATGCAGAGATCGACATTGTTTCCCAAGCACTACAAACTGTTAGCTTGAGCACTACCGCACCTCCTCGACTATATCCTCAGTGCTTGAAGAAAAACCAGAGAGCTGCATTGGCAGAGATAACAGATGTGCTACGTGCTGTATGTCATGCACATAGACTACCTCTGGCACTAACTTGGATTCCTTGCTGTTATTCTTTGGATGCTGTTGATGATGCTGCAAGAGTTCGTGTTAAGGAAAATAGCATTAGCCCAAAGGATAAATTCGTATTATGTATTGAGGAAACAGCGTGTTATGTGAATGACAAAGCAACTCAAGGATTTGTGCATGCGTGTCTGGAGCATCATCTTGAAGAAGGGCAAGGGATAGCTGGGAAAGCTCTTCAATCTAATCATCCGTACTTTTATCCTGACGTGAAGACTTATGATATTAATAAGTATCCGCTGGTCCATCATGCACGCAAGTTTAGTTTGAATGCTGCAGTTGCAATCAGGCTGAGAAGCACATACACTGGTGATGATGATTATATACTAGAATTCTTTCTCCCTGTCAATATGAAAGGAGGTTCAGAACAACAACTTTTGTTAAACAATCTCTCCATTACAATGCAAAGAATGTGTAGGAGTTTGAGGACAGTTTCAAAGGAAGAATTAATAGGGGTCGAAAATTCTGTTGCTGGATTTCAGAGTGGATTAATTGGGAAGTCTACAACTACATCTAGGAGAAACTCGCAATCCACGGTAACAGACAGTGAAACAAGGGTATCTAACTCAATAAATGATGGAACCGAAGCAGAATGTCCGAAGAAGCAGATGACTAGTGGATCACGGAAGCAGGGGGAGAAAAAGCGTAGCACAACTGAAAAAAATGTGAGCTTGAGTGTTCTTCAGCAATATTTTTCTGGCAGTCTCAAGGATGCAGCAAAGAGCATTGGTGACAAAGGTAGACGCTCTCCAGATAATGATAATGACGAAGTTTGTCCAACAACACTGAAAAGAATATGTAGACAACATGGAATTTTGAGATGGCCATCCCGTAAAATAAACAAGGTAAATCGTTCGTTAAGGAAAATACAGACAGTTCTCGATTCTGTCAAGGGGGTGGAAGGCGGATTGAAGTTTGATCCGACTACAGGGGGTCTTATGGCAGCTGGCTCTCTTATTTCAGAACTCAATGGACAAAATAGTCTTCTCTTCTCTGATAATAACCCAGCTATAAGAAAGCTTGAGCCGTTTGTTCAAAATGTAAATTCAGTTCCTCCAGTCCCTTTCAATAGTCAAAATTCTGCCATGAAATTGGAAATAGACGAGTCTTTCATTGCTATATCCCAAAGAACGCAGTCGAGGAATGTTCTCATTCCAGAAAAGGAGCCCAATGTTTACCAACTTGATGGTAGTGAAGGTTCAAAGTCCACGTTTGCACCATGCCAGCTTGCTGACCTGGATATGTTGAGTTGGGATGTCCCAGAGAATGCTTTAGGTTCTATTATTGCTAGAAAAAGCAACAGACTGGATTTTGTTGAGAATGATTTGAGGTCAGGTAATGCTGACGGCCACTTTATGGTCAAGAGTTCAAGCTCTTTTGCAGCTGTTGATGAAGCGGGTACCATGTTGCAAACTGATGATGAAATCAATGAACATTACCAGCCAACTAGTTCGAGCATGACAGACTCATCAAATGGCTCTGGCTTATTGATCCATGGCAGTTCATCCAGTTGTCAGAGTGTTGAGGAGAGGAAGCATTTGCCAGAAAAAATTAGCTCTGTTGACAGTGATTCCAAGATTATTGTAAAAGCTTCATACAAAGAAGACACAGTTCGATTCAGGTTTGATCCTTCTTTAGGTTATCTCGAGCTGTATGACGAAGTTGGCAAGAGATTCAAGCTAAACCAGGGGACATTCCAACTCAAATATCTGGACGATGAAAAAGAATGGGTAATGCTAGTAAGCAATTCAGACTTGCAGGAATGCCTTGAGGTGATGGATGAAATCGGCACAAGAAATGTGAAGTTTCTCGTTCGTGATATCGCGTGTGCCGTGGGTAGTTCTGGCAGCAGTAGTTGCTTCCTATCTAGAGGTTCATAA 3000 42.8 MENPFSSKEEGIGYWGPPRTQAETITSTDAGMRVLSPEDVLHSFSELMNFDSYAGWGNNNNCATIDQIFTSCGFSSIPPMSTCASMEGSTFLEGGSYEGFPLNEHGGASISMANSFTCGDKVMFQQPDAEFGVSDVSDNANEAGQKSNDVVLDMDSCLVSRPLGWSLDERMLRALSLFKESSPGGILAQVWVPVKEGDKFFLSTSEQPYLLDQMLTGYREVSRTFTFSAEGKLGSLLGLPGRVFTTKLPEWTSNVRYYSENEYLRMEHAIGHEVYGSVALPVFNNELGSSCCAVLEVVTTKEKPNFDAEIDIVSQALQTVSLSTTAPPRLYPQCLKKNQRAALAEITDVLRAVCHAHRLPLALTWIPCCYSLDAVDDAARVRVKENSISPKDKFVLCIEETACYVNDKATQGFVHACLEHHLEEGQGIAGKALQSNHPYFYPDVKTYDINKYPLVHHARKFSLNAAVAIRLRSTYTGDDDYILEFFLPVNMKGGSEQQLLLNNLSITMQRMCRSLRTVSKEELIGVENSVAGFQSGLIGKSTTTSRRNSQSTVTDSETRVSNSINDGTEAECPKKQMTSGSRKQGEKKRSTTEKNVSLSVLQQYFSGSLKDAAKSIGDKGRRSPDNDNDEVCPTTLKRICRQHGILRWPSRKINKVNRSLRKIQTVLDSVKGVEGGLKFDPTTGGLMAAGSLISELNGQNSLLFSDNNPAIRKLEPFVQNVNSVPPVPFNSQNSAMKLEIDESFIAISQRTQSRNVLIPEKEPNVYQLDGSEGSKSTFAPCQLADLDMLSWDVPENALGSIIARKSNRLDFVENDLRSGNADGHFMVKSSSSFAAVDEAGTMLQTDDEINEHYQPTSSSMTDSSNGSGLLIHGSSSSCQSVEERKHLPEKISSVDSDSKIIVKASYKEDTVRFRFDPSLGYLELYDEVGKRFKLNQGTFQLKYLDDEKEWVMLVSNSDLQECLEVMDEIGTRNVKFLVRDIACAVGSSGSSSCFLSRGS 999
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31045403 31054798 + Maker00037568 Lcy11g1016 646917

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1016 999 PANTHER PROTEIN NLP8 161 992 IPR045012 GO:0003700(InterPro)
Lcy11g1016 999 Pfam PB1 domain 901 979 IPR000270 GO:0005515(InterPro)
Lcy11g1016 999 SMART PB1_new 899 981 IPR000270 GO:0005515(InterPro)
Lcy11g1016 999 SUPERFAMILY CAD & PB1 domains 892 983 - -
Lcy11g1016 999 MobiDBLite consensus disorder prediction 539 579 - -
Lcy11g1016 999 ProSiteProfiles RWP-RK domain profile. 582 676 IPR003035 -
Lcy11g1016 999 MobiDBLite consensus disorder prediction 539 594 - -
Lcy11g1016 999 ProSiteProfiles PB1 domain profile. 899 981 IPR053793 -
Lcy11g1016 999 Pfam NLP protein GAF domain 333 516 IPR055081 -
Lcy11g1016 999 Gene3D - 896 981 - -
Lcy11g1016 999 Pfam RWP-RK domain 596 655 IPR003035 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1016 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1016 Lcy-Chr11:31045403 Lcy6g0777 Lcy-Chr6:7643434 4.29E-137 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1280 . . . . . Bpe14g01069 . . . . Cma06g01701 Cma14g01419 . Car14g01252 Sed02g0966 . Cpe03g01194 Bhi01g03703 Tan10g1398 Cmetu07g0313 . Hepe05g1115 . Lcy11g1016 . . . . . . . . . . Cone11ag0645 . . . Cme07g01966 Blo02g00452 Blo07g00121 Bda11g00482 Bda13g00247 . . Bma02g00962 Bma06g01446 . . Cmo14g01455 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006292 2 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19110 None None None None Lcy TF