Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy11g1058 | ATGATCAGTGTGGGTGTGAGAAGCCAAAATGATGGTCAGTGTGAGAAGCCAAATCCAGATCCTTTTAATTTGGGGTTGAATTGCTGGGAGATGTTTGCAGAAGTGATGGAGGTAGAAACAATGATGGAACAGAAAAGGAACCTATGCTCTGTTGATGAGAGCAGTCTCACTTCTCTTACATCCAAGCGACACAAGACTGATTTTTCTATCTCCTCTAAGGAGAGGAAAGACAAACTGGGTGAACGAATTGTGGCTTTGCAACAACTTGTTTCACCATACGGAAAGACAGATACGGCATCTGTTCTTCTGGAGGCAATGGAATATATTCAATTCCTTCACGAGCAAGTCAAGGTGTTGAGTGCTCCATATCTCCAAAGCACACCCACTGTTCAGTTGCAGGAGCTGGAGCCATACAACCACAGCCTGAGGAACAGAGGTTTATGTCTTGTTCCAATCTCTTGTACTGCTGGAGTTGCACGCAGCAACGGTGCTGATATTTGGGCTCCTGTGAAGACAACCTCCCCCAAATTTGAGAAGTCCATCTCACCATTCAATTGA | 558 | 44.98 | MISVGVRSQNDGQCEKPNPDPFNLGLNCWEMFAEVMEVETMMEQKRNLCSVDESSLTSLTSKRHKTDFSISSKERKDKLGERIVALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVQLQELEPYNHSLRNRGLCLVPISCTAGVARSNGADIWAPVKTTSPKFEKSISPFN | 185 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 31976109 | 31979490 | + | Maker00037586 | Lcy11g1058 | 646959 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy11g1058 | 185 | FunFam | Transcription factor bHLH113 family | 62 | 138 | - | - | |
Lcy11g1058 | 185 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 65 | 128 | IPR036638 | GO:0046983(InterPro) | |
Lcy11g1058 | 185 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 62 | 156 | IPR045843 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
Lcy11g1058 | 185 | SMART | finulus | 71 | 118 | IPR011598 | GO:0046983(InterPro) | |
Lcy11g1058 | 185 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 63 | 112 | IPR011598 | GO:0046983(InterPro) | |
Lcy11g1058 | 185 | CDD | bHLH_AtbHLH_like | 69 | 120 | IPR045239 | - | |
Lcy11g1058 | 185 | Gene3D | - | 60 | 144 | IPR036638 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g1058 | Lcy-Chr11:31976109 | Lcy3g1249 | Lcy-Chr3:38183760 | 5.55E-29 | dispersed | |
Lcy11g1058 | Lcy-Chr11:31976109 | Lcy6g1339 | Lcy-Chr6:18534214 | 2.02E-29 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy11g1058 | - | - | - | 0.0 |