Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1058 ATGATCAGTGTGGGTGTGAGAAGCCAAAATGATGGTCAGTGTGAGAAGCCAAATCCAGATCCTTTTAATTTGGGGTTGAATTGCTGGGAGATGTTTGCAGAAGTGATGGAGGTAGAAACAATGATGGAACAGAAAAGGAACCTATGCTCTGTTGATGAGAGCAGTCTCACTTCTCTTACATCCAAGCGACACAAGACTGATTTTTCTATCTCCTCTAAGGAGAGGAAAGACAAACTGGGTGAACGAATTGTGGCTTTGCAACAACTTGTTTCACCATACGGAAAGACAGATACGGCATCTGTTCTTCTGGAGGCAATGGAATATATTCAATTCCTTCACGAGCAAGTCAAGGTGTTGAGTGCTCCATATCTCCAAAGCACACCCACTGTTCAGTTGCAGGAGCTGGAGCCATACAACCACAGCCTGAGGAACAGAGGTTTATGTCTTGTTCCAATCTCTTGTACTGCTGGAGTTGCACGCAGCAACGGTGCTGATATTTGGGCTCCTGTGAAGACAACCTCCCCCAAATTTGAGAAGTCCATCTCACCATTCAATTGA 558 44.98 MISVGVRSQNDGQCEKPNPDPFNLGLNCWEMFAEVMEVETMMEQKRNLCSVDESSLTSLTSKRHKTDFSISSKERKDKLGERIVALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVQLQELEPYNHSLRNRGLCLVPISCTAGVARSNGADIWAPVKTTSPKFEKSISPFN 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31976109 31979490 + Maker00037586 Lcy11g1058 646959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1058 185 FunFam Transcription factor bHLH113 family 62 138 - -
Lcy11g1058 185 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 128 IPR036638 GO:0046983(InterPro)
Lcy11g1058 185 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 62 156 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Lcy11g1058 185 SMART finulus 71 118 IPR011598 GO:0046983(InterPro)
Lcy11g1058 185 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 63 112 IPR011598 GO:0046983(InterPro)
Lcy11g1058 185 CDD bHLH_AtbHLH_like 69 120 IPR045239 -
Lcy11g1058 185 Gene3D - 60 144 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1058 Lcy-Chr11:31976109 Lcy3g1249 Lcy-Chr3:38183760 5.55E-29 dispersed
Lcy11g1058 Lcy-Chr11:31976109 Lcy6g1339 Lcy-Chr6:18534214 2.02E-29 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1058 - - - 0.0