Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1075 ATGGAGAAAACCCCACCCCCGGAAAAGTCCGAAAGTTTTTCAAAAAATTTCAATAGAAGGATTGCAAATTTGGGCTCACCTCGCCGGGTTCACGATGCCGCCGATGCTAAATCTGAAGCTGAGAAGCTTGCAGAAGATGAAGCCTTCATTGAAGACCCTCTTTCTGAATCTGAAACCGCATTGCTTTTCGAAGAGGTTGATCAATTCCTCCTCGCCTTGTCCAATGCTGGGGAGGATGGATCCAATCTCAGCCCTCAAATTCCCACCTCTGTTCATTCCCTGTCCAAAATGGTGGACTCCATGGTCTCCAGGTACAATTCTAGCAAGTATCCGGCCAAGCTCGGCAAAGATCCCGACTGGGATTCTTCCTTCTTCGAAGCTCTTCATCGCATTTCGAAGATTGCGATTAAATTAAGCGAATTCCCTTCCAGCCCTGCCTCGATTCCTTCGCTCAATCGGACCACCACGGCTCTGCAGCGAGCCATGTCGCTGTTGGACGAAGAATTCAACGCCCTTCTTAAAGAATGCAAACATCGAGAGTCTGATTCCAAATCTGACAAGAAAGCGTCGAAGCAGTCGTCCTTCAAAACTGCCAACGAATCGCCAGATCAACATCACAGCACCCTTTCTGAATCATCCGATTCCGATTCTTTCAAGGAAGAGGAATTCCCCTCTTTCTCGCCGGAAACCGTATCAAACATGAAACGAATCGCCGGAACGATGATCTCCGCCGGCTACGAGAAGGAATGTTGCATGAGTTACAGCTTCCTCCGGCAGAGCTCGTTCAAAGGAATACTGAACAAGCTCGGGTACGAAAGTATTACCATAGACGACATTCAGAAAATGCACTGGGAGACTCTTCAATCGGAAATCGACAAATGGATCGCCGTCGTCAAGAAATGCTCAAAATCTCTGTTCCCAGGCGAGTGGAAGCTCTGTGACTCTGTTTTCACCGATCATCCTTTCATTGCTCAAACTCTCTTCAGCAATTTAACAAGAGCAGTAGTCATCAAGCTTCTCAACTTCGCAAATGCCGTCGTTTTAACCAAGAGATCGGCCGAGAAGATGTTCAAATTACTCGACATGTACGAAACCATCCGCGACTTAATTCCAGCCATCAATGGCTTCCCTGAAAATTGCAGAACAGAGCTAATTTCCGAAGCGGAAGGGGCAAAACGCGGGATAGGCGAAGCAATCGTCGGCATTTTCTACGACCTGGAAAGCTCAATCAAAAGCGACAACGCAAAAATTCCAGTTCCAGGAGGAGCAGTTCATCCATTGACACGCTACATTATGAATTACCTAAAATACGCTTGCGAGTACAAAGAAACCCTAGAACAGGTCTTCCAGTTCCTGGACCCTAAAATCGACGAAGACCACCCGGCGAGAATGGACGAAAACGACGATGCATCGCCGAGAAAGTCTCAGCTCGCGATTCAGATCGCAATGGTGATGGATCTGCTCGACGCGAATCTCTCGATGAGATCGAAACTGTACCGAGACGCATCTCTTCGATACATCTTCCTGATGAACAATGGAAGGTACATAGTTCAGAAAATCAAAGGCTCAACTGGAATTACCGAATTGATGGGAGACCGATGGTGCCGCAAGCGATCGACGAATCTGCGACAGTACCACAAAAATTACCAGAGGGAAACCTGGAGTAAGGTGCTGCAGTGCCTGAGCCACGAAGGATTGCAGGTGAACGGGAAGGTCTCGAAGCCGATTCTGAAGGAGAGATTCAAAAGCTTCAACGCAATGTTCGACGAAATACACAAAACGCAGAGCAGTTGGGTGGTGAGCGACGAGCAGCTTCAGTCGGAGCTCCGGATTTCGGTGTCGGCGGTGATGATTCCGGCGTACCGTTCGTTCGTGGGGAGATTCAAGCAGCATTTCGATCCGGGAAGGCAATCGGAGAAGTACATAAAGTATCAGCCTGAAGATATTGAGGGTTTGATCGATGACCTGTTTGATGGAAACACTGCATCAATGGCGAGAAGGAGAATGTAG 2010 48.16 MEKTPPPEKSESFSKNFNRRIANLGSPRRVHDAADAKSEAEKLAEDEAFIEDPLSESETALLFEEVDQFLLALSNAGEDGSNLSPQIPTSVHSLSKMVDSMVSRYNSSKYPAKLGKDPDWDSSFFEALHRISKIAIKLSEFPSSPASIPSLNRTTTALQRAMSLLDEEFNALLKECKHRESDSKSDKKASKQSSFKTANESPDQHHSTLSESSDSDSFKEEEFPSFSPETVSNMKRIAGTMISAGYEKECCMSYSFLRQSSFKGILNKLGYESITIDDIQKMHWETLQSEIDKWIAVVKKCSKSLFPGEWKLCDSVFTDHPFIAQTLFSNLTRAVVIKLLNFANAVVLTKRSAEKMFKLLDMYETIRDLIPAINGFPENCRTELISEAEGAKRGIGEAIVGIFYDLESSIKSDNAKIPVPGGAVHPLTRYIMNYLKYACEYKETLEQVFQFLDPKIDEDHPARMDENDDASPRKSQLAIQIAMVMDLLDANLSMRSKLYRDASLRYIFLMNNGRYIVQKIKGSTGITELMGDRWCRKRSTNLRQYHKNYQRETWSKVLQCLSHEGLQVNGKVSKPILKERFKSFNAMFDEIHKTQSSWVVSDEQLQSELRISVSAVMIPAYRSFVGRFKQHFDPGRQSEKYIKYQPEDIEGLIDDLFDGNTASMARRRM 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32426632 32428641 - Maker00037566 Lcy11g1075 646976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1075 669 PANTHER EXOCYST COMPLEX PROTEIN EXO70 98 660 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Lcy11g1075 669 MobiDBLite consensus disorder prediction 30 48 - -
Lcy11g1075 669 SUPERFAMILY Cullin repeat-like 120 658 IPR016159 -
Lcy11g1075 669 MobiDBLite consensus disorder prediction 1 15 - -
Lcy11g1075 669 MobiDBLite consensus disorder prediction 180 227 - -
Lcy11g1075 669 MobiDBLite consensus disorder prediction 1 48 - -
Lcy11g1075 669 Gene3D Exocyst complex component Exo70 113 667 - -
Lcy11g1075 669 FunFam Exocyst subunit Exo70 family protein 107 665 - -
Lcy11g1075 669 Pfam Exocyst complex component Exo70 N-terminal 96 175 - -
Lcy11g1075 669 MobiDBLite consensus disorder prediction 207 223 - -
Lcy11g1075 669 Pfam Exo70 exocyst complex subunit C-terminal 293 655 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1115 Lcy-Chr10:33504180 Lcy11g1075 Lcy-Chr11:32426632 3.00E-204 dispersed
Lcy11g1075 Lcy-Chr11:32426632 Lcy13g0060 Lcy-Chr13:674209 1.33E-102 dispersed
Lcy11g1075 Lcy-Chr11:32426632 Lcy2g0063 Lcy-Chr2:462483 3.37E-110 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1075 K07195 - csv:101220402 1139.79