Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1085 ATGGCTTGGTACCTTAGCTTGTTCTTCTTCTTTCTCGTCTCTTCTGCAACTGCTTGTAATCGTTGTGTTCATCGATCCAAAGCTGCTCATTATTACGATGATGCACCTACTACATATGGAGGGGCATGTGGATATGGAAACTTGGCATTAGAAATGTCCCAAGGATACTTTGCAGCTGTTTCACCTTCCCTTTATCGACAAGGAGTGGGTTGTGGTGCCTGCTATAAGGTAAAATGTGTGAACAACAAATTGTGTAACACAATGGGGACCAAAGTATTTGTGGCAGATCAAACTTACGATAAAAGAACAGATTTTGTTGTTAGTAGGAAGGCTTTCTCTAGCATGGCTTTGAAGGGCAAAGGCCAAGAGCTTTTGAATACCGGAATCGTTGACATAGAATACATGAGGGTACCTTGTGAATACAATAAAAATTTGTTGGTGCAAGTTGTAGAATGGAGTAGCAAACCATACTATTTAGCAATCAAGCTCCTATACCAAGGTGGCCAAACAGACATACTAGCTATTGACATAGCACAGGTTGGTTCTCCAACATGGCGCCCAATGAAAAGAAACTACGGAGCTATTTGGGATATCAATAATGTGTCAGAAGGAGCATTACAACTAAGAATGCTGGTAATTTCGGGATATAATAAAAAGTTGATTTTTGCAAAGTATGTGCTTCCTGCTAATTGGAAAAATGGTGAGATCTACGATACTAAAGTTCAGATCAAAGATGTTGCTGCAGAGAAATGCACACCACCCGCTAAGTGTGTTTAG 777 40.28 MAWYLSLFFFFLVSSATACNRCVHRSKAAHYYDDAPTTYGGACGYGNLALEMSQGYFAAVSPSLYRQGVGCGACYKVKCVNNKLCNTMGTKVFVADQTYDKRTDFVVSRKAFSSMALKGKGQELLNTGIVDIEYMRVPCEYNKNLLVQVVEWSSKPYYLAIKLLYQGGQTDILAIDIAQVGSPTWRPMKRNYGAIWDINNVSEGALQLRMLVISGYNKKLIFAKYVLPANWKNGEIYDTKVQIKDVAAEKCTPPAKCV 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32691863 32693225 + Maker00037537 Lcy11g1085 646986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1085 258 Gene3D - 12 140 IPR036908 -
Lcy11g1085 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 144 IPR007112 -
Lcy11g1085 258 PANTHER EXPANSIN-B3 8 245 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Lcy11g1085 258 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576(InterPro)
Lcy11g1085 258 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576(InterPro)
Lcy11g1085 258 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576(InterPro)
Lcy11g1085 258 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576(InterPro)
Lcy11g1085 258 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576(InterPro)
Lcy11g1085 258 Pfam Expansin C-terminal domain 154 226 IPR007117 -
Lcy11g1085 258 PRINTS Major pollen allergen Lol pI signature 215 232 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lcy11g1085 258 PRINTS Major pollen allergen Lol pI signature 164 179 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lcy11g1085 258 PRINTS Major pollen allergen Lol pI signature 148 163 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lcy11g1085 258 PRINTS Major pollen allergen Lol pI signature 116 131 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lcy11g1085 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 239 IPR007117 -
Lcy11g1085 258 Gene3D - 141 244 IPR036749 -
Lcy11g1085 258 Pfam Lytic transglycolase 58 134 IPR009009 -
Lcy11g1085 258 SUPERFAMILY PHL pollen allergen 150 238 IPR036749 -
Lcy11g1085 258 SUPERFAMILY Barwin-like endoglucanases 8 143 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1085 Lcy-Chr11:32691863 Lcy2g1323 Lcy-Chr2:14624867 4.46E-140 dispersed
Lcy11g1084 Lcy-Chr11:32677427 Lcy11g1085 Lcy-Chr11:32691863 2.11E-95 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1085 - - - 0.0