Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1096 ATGATGGAAAATTTCCCAAATTTTCGTTCAACTTCATCTTCTTCTTCAACCTCCTTCTCTCTCCAACAAATGCTGATTTCTCGAGCTTCCGAGATCGCCGGAATCCATGGAGGCCATTTCGGACAGACGCCCATCTCCGACGGGTTCCCGTTGTTTCGCGACGTTTCGACGAACGACATGTCGGTCGATGCGACGAGAAGTACGAAGGACGACATGGTTTCGATGAGTAAAAGCTTCTTCCATGTTGATGGGTCAGCAGAAATTGGAGTGGATAGGTTGGAGAAGAAGGCCGTAGCCGGGGGAGCGACGACGGCGGTGACGATGACGACGGGACGGGGAGATTATGATAAGAAAAAGAAGACGAGAAGCCGGAGATTTGCTTTTCAAACGAGGAGTCAAGTTGATATTCTTGATGATGGTTATAGATGGAGAAAGTATGGACAGAAGGCTGTGAAGAACAACAAATTCCCAAGAAGCTACTATAGATGTACACACCAAGGTTGCAAAGTGAAGAAGCAAGTTCAAAGGCTAACAAGAGATGAAGGTGTGGTTGTGACAACTTATGAAGGCATGCATTCTCATCCCATTGAGAAATCCACTGATAACTTTGAGCATATTTTGAGTCAGATGCAAATTTACACTTCTTATTGA 651 45.31 MMENFPNFRSTSSSSSTSFSLQQMLISRASEIAGIHGGHFGQTPISDGFPLFRDVSTNDMSVDATRSTKDDMVSMSKSFFHVDGSAEIGVDRLEKKAVAGGATTAVTMTTGRGDYDKKKKTRSRRFAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCKVKKQVQRLTRDEGVVVTTYEGMHSHPIEKSTDNFEHILSQMQIYTSY 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 32924677 32927779 + Maker00037564 Lcy11g1096 646997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1096 216 Gene3D WRKY domain 121 196 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy11g1096 216 ProSiteProfiles WRKY domain profile. 132 197 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy11g1096 216 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 104 197 IPR044810 GO:0003700(InterPro)
Lcy11g1096 216 SMART WRKY_cls 137 196 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy11g1096 216 FunFam WRKY transcription factor 57 123 197 - -
Lcy11g1096 216 Pfam WRKY DNA -binding domain 138 195 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy11g1096 216 SUPERFAMILY WRKY DNA-binding domain 129 196 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1096 Lcy-Chr11:32924677 Lcy11g2004 Lcy-Chr11:43664404 6.73E-36 dispersed
Lcy10g2292 Lcy-Chr10:46551930 Lcy11g1096 Lcy-Chr11:32924677 5.73E-58 transposed
Lcy10g0086 Lcy-Chr10:1188721 Lcy11g1096 Lcy-Chr11:32924677 6.30E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19113 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1096 - - - 0.0