Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy11g1096 | ATGATGGAAAATTTCCCAAATTTTCGTTCAACTTCATCTTCTTCTTCAACCTCCTTCTCTCTCCAACAAATGCTGATTTCTCGAGCTTCCGAGATCGCCGGAATCCATGGAGGCCATTTCGGACAGACGCCCATCTCCGACGGGTTCCCGTTGTTTCGCGACGTTTCGACGAACGACATGTCGGTCGATGCGACGAGAAGTACGAAGGACGACATGGTTTCGATGAGTAAAAGCTTCTTCCATGTTGATGGGTCAGCAGAAATTGGAGTGGATAGGTTGGAGAAGAAGGCCGTAGCCGGGGGAGCGACGACGGCGGTGACGATGACGACGGGACGGGGAGATTATGATAAGAAAAAGAAGACGAGAAGCCGGAGATTTGCTTTTCAAACGAGGAGTCAAGTTGATATTCTTGATGATGGTTATAGATGGAGAAAGTATGGACAGAAGGCTGTGAAGAACAACAAATTCCCAAGAAGCTACTATAGATGTACACACCAAGGTTGCAAAGTGAAGAAGCAAGTTCAAAGGCTAACAAGAGATGAAGGTGTGGTTGTGACAACTTATGAAGGCATGCATTCTCATCCCATTGAGAAATCCACTGATAACTTTGAGCATATTTTGAGTCAGATGCAAATTTACACTTCTTATTGA | 651 | 45.31 | MMENFPNFRSTSSSSSTSFSLQQMLISRASEIAGIHGGHFGQTPISDGFPLFRDVSTNDMSVDATRSTKDDMVSMSKSFFHVDGSAEIGVDRLEKKAVAGGATTAVTMTTGRGDYDKKKKTRSRRFAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCKVKKQVQRLTRDEGVVVTTYEGMHSHPIEKSTDNFEHILSQMQIYTSY | 216 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 32924677 | 32927779 | + | Maker00037564 | Lcy11g1096 | 646997 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy11g1096 | 216 | Gene3D | WRKY domain | 121 | 196 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy11g1096 | 216 | ProSiteProfiles | WRKY domain profile. | 132 | 197 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy11g1096 | 216 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 104 | 197 | IPR044810 | GO:0003700(InterPro) | |
Lcy11g1096 | 216 | SMART | WRKY_cls | 137 | 196 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy11g1096 | 216 | FunFam | WRKY transcription factor 57 | 123 | 197 | - | - | |
Lcy11g1096 | 216 | Pfam | WRKY DNA -binding domain | 138 | 195 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy11g1096 | 216 | SUPERFAMILY | WRKY DNA-binding domain | 129 | 196 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g1096 | Lcy-Chr11:32924677 | Lcy11g2004 | Lcy-Chr11:43664404 | 6.73E-36 | dispersed | |
Lcy10g2292 | Lcy-Chr10:46551930 | Lcy11g1096 | Lcy-Chr11:32924677 | 5.73E-58 | transposed | |
Lcy10g0086 | Lcy-Chr10:1188721 | Lcy11g1096 | Lcy-Chr11:32924677 | 6.30E-58 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19113 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy11g1096 | - | - | - | 0.0 |