Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1139 TGGCACTACCTCAATAGAGTCAACAATGGCTCAACCCATCTGGGTAAATTCGAAAATAGCGAGAACTTGAAGGGGTACTGTGGACACTTCGGCTATTTGGAGTGCAGGTCTGAATCGAAGCTTCTCTGTTCAGCTGTGAAAGTTTCTTTCTTGACGTTAGCTGTAATTTTGTTTTCTGGGTCCCGGTTTCTTGGAATTTTGGTTGAGTTAGATCAATTTTCTTGGCTCTTAATTGTTGCCATGTTTGATTGTTCTTCAACAGCTGAGCTTTCAGGTTGGCCTCAAATCTCCAGGAGGGAATTTAGTTTCAGTTCAGATCTCAACGCCTTTCAAACCCAAGGTCTTTTCCAAAAGCACGTGGAAGTTACTTCTCTCAGTTCCCTTAACTATTTGAGCACTCTTGGCTTGTTGGAGCCTAACAATGTCGACCTCCCTCCCATCATTACCAGTGACCTTACAGAACCTGATGAATCAAATAGCCTCTTCTATAGTTATGATGAACAAACTCTCTCCCTCGTTGGAAGTATAATGAGAGCACCATCATTACTTGCCCAGTGCTTGCCTGGCTTGGTGCCCCAAGATAAAGGAAGCCACAGCAGTCCCTCCATTTCAGAGAGAGATGTCCATCTCCCCTCACCAGCTGTTGAGATTCTTCCTTCAAAGGCAATTCATTTATACTTGTCTTCCTGTTATTGCAAAGCGCCCATCATAATTATGAAAAAACGAATTTTAACAGCTCATCCATACAAATACGCAGGGGAGAACGTAGATTTGCAAGGCCTCAATGTCTTTAAGGGTAGAGTTAGTGTTGCGGATATAATTGGCTTCAATGGCTCGGAGTCTATATCTTCAAAACCTGAAGGTACTCATATGCTTTCTGCACTCAGTGGTCATCTGAAATCTTGGGACAGTTCCATTGATCTTGTTAATGTCCTTAAGCATGAGATTCGTGACGGACAACTGAGCTTTAGGGGCAAAAGAGTACTTGAGCTGGGTTGTAGCTATGGACTTCCTGGGGTTTTTGCTTGCCTCAAGGGTGCAAGCATCGTGCACTTTCAAGACCTCAGTGCAGAAACTGTTAGATGCACAACCATACCGAACGTCCTTGCCAATCTCGAACAAGCTCGGGACAGGCAGAGTAGACAGCCAGAGAGTCCCTTAACTCCGTCCAGACACACTTTGACCCCATCAGTACATTTTTATGCTGGTGACTGGGAAGAGCTCCCAACAGTCTTATCTGTTGTTAGGGGTGATGGATTCGAAGCACCTACCGGAATGAGCTTGAGCTTTTCTGAAGAAGATTTTATGGATGGTTGCAGCAGTCAAGATGGCAGCATCATCGGCCACGAGTCTTCCTCAAGGAGATCGAGGAAACTATCGGGAAGTCGAGCATGGGAGAGGGCTAGTGAGACCGATCAGGGAGAAGGTGGATATGATGTCATTTTAATGGCAGAAATCCCATATTCACTTAACTCTTTGAAGAAGCTATATGCGCTTATAAAGAAGTGTGTGAGGCCTCCATATGGAGTTTTATACCTGGCCACAAAGAAGAATTACGTCGGGTTCAATAGCGGAGCAAGGCATTTGAGGAGTCTGGTCGATGAGGAAGGCGTTTTTGGAGCTCACTTGGTGAAGGAGATGACCGACCGAGATATTTGGAAGTTCTTTCTCAAGTGA 1677 44.96 WHYLNRVNNGSTHLGKFENSENLKGYCGHFGYLECRSESKLLCSAVKVSFLTLAVILFSGSRFLGILVELDQFSWLLIVAMFDCSSTAELSGWPQISRREFSFSSDLNAFQTQGLFQKHVEVTSLSSLNYLSTLGLLEPNNVDLPPIITSDLTEPDESNSLFYSYDEQTLSLVGSIMRAPSLLAQCLPGLVPQDKGSHSSPSISERDVHLPSPAVEILPSKAIHLYLSSCYCKAPIIIMKKRILTAHPYKYAGENVDLQGLNVFKGRVSVADIIGFNGSESISSKPEGTHMLSALSGHLKSWDSSIDLVNVLKHEIRDGQLSFRGKRVLELGCSYGLPGVFACLKGASIVHFQDLSAETVRCTTIPNVLANLEQARDRQSRQPESPLTPSRHTLTPSVHFYAGDWEELPTVLSVVRGDGFEAPTGMSLSFSEEDFMDGCSSQDGSIIGHESSSRRSRKLSGSRAWERASETDQGEGGYDVILMAEIPYSLNSLKKLYALIKKCVRPPYGVLYLATKKNYVGFNSGARHLRSLVDEEGVFGAHLVKEMTDRDIWKFFLK 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33731406 33738458 + Maker00005132 Lcy11g1139 647040

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1139 558 Gene3D Vaccinia Virus protein VP39 283 536 IPR029063 -
Lcy11g1139 558 MobiDBLite consensus disorder prediction 373 395 - -
Lcy11g1139 558 PANTHER HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN 282 544 IPR019410 -
Lcy11g1139 558 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 321 516 IPR029063 -
Lcy11g1139 558 MobiDBLite consensus disorder prediction 445 470 - -
Lcy11g1139 558 MobiDBLite consensus disorder prediction 450 470 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1139 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1139 Lcy-Chr11:33731406 Lcy11g1285 Lcy-Chr11:36296512 1.36E-50 dispersed
Lcy11g1139 Lcy-Chr11:33731406 Lcy4g2289 Lcy-Chr4:49453602 1.34E-07 transposed
Lcy11g1139 Lcy-Chr11:33731406 Lcy13g2353 Lcy-Chr13:42564473 5.47E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1198 . . . . . . . . . . Cma06g01651 Cma14g01468 Car06g01402 Car14g01304 Sed12g0631 Cpe08g00080 Cpe03g01237 Bhi01g02695 Tan10g1290 Cmetu07g1206 . Hepe05g1226 . Lcy11g1139 . . . . . . . . . . Cone11ag0615 . . . Cme07g01895 . . Bda11g00459 . . Bpe13g00737 . Bma06g01395 . Cmo06g01654 Cmo14g01507 . . . . . . . . . . . . . Cla07g01484 Cam07g1580 Cec07g1680 Cco07g1640 Clacu07g1571 Cmu07g1539 Cre07g1916 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005791 1 3 0 1 1 1 2 1 1 1 1 1 4 1 1 2 1 2 3 1 1 1 1 1 1 0 1 2 1 1 39