Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1140 CAAAACGCACTATGCCATGCCATCTTGAGAGATCTGGTGTCAGACAAGGCATCGAGCCCAATTATCCATTTCGACCAGCCAATCTGGGGCTTTCACAAAGCAAAATTTTGGAATTTGGAGCCTGGACCCTTTTTAAATTGGATCGTTCTACCGATGGCCATGTTTCTTACTTGTCCTATTAGAACTCCGGTGCTTTCGATTGCATTTGCGCGAAGAATTACATGCAACGGCATGTCGAAAGGAAGTTTATCTTCCTTGTCAACAAGCTCAAACAAAGTCCCTCCAGAATCAGGTGTTAAGTCCTCCAATGGCGTTTCTGAGTCTGAAACTCGTGTATTCGTGAGGAGGAGGGTGAAAAAGAATGCAGAAGTTCAAGATAGCGGGCTTGAAGTTGAACCTAATGTCGACGCTAAACGCTGCTGTCCTCCTAATATTGAAGATTTTGCATTCAAACGAACAAAGGATTCCCCCGGATCAAAAAGTGGCAAAAAGTTTATCAAAAGGTTACCAAGGCTAGTGCTAGTTTTAAGGCATGCTATGAGGCCTGTGTCTGCTTGGCAGGTGAAGCCAACCTCTCGAAGGTCTTCTGCTGCTAGCGGGCATCGATGTCAGCCAACCAGTGGAGAGGTTAGCAGGTCCTTTTGGACTGCCGACTGCCTGGGAAAGCAATTTTATATTCATGTATGGAAATGGAAGTATGCAACGATTGAAGGGAAGTCGAAGCCTCCTCTAGATCCTCTTCTCACAGAAATTGAAGATTCTAATCCAACTAGACAAAAAGGCATAGCAGAAGGAGGCAAACCACCTGCGAATTGGGAAAAAGTCCTTGAAGGAATTCGTGAAATGAGATCCTCTGAAGAAGCTCCAGTAGATACCATGGGATGTGGGCAAGCTGGTAGTACTCTTCCTCCCAAGGAAAGAAGATTTTCTGTCTTGGCATCTTCTCTTCTCTCTAGCCAAACCAAAGACCACGTGACTCATGGCAAGCCCAGGGCAGTACATTATTCGTTGTTTCCCAGAGATGTTAAGCTCTCTCTTCTAATATTTTCTTTAATTGACAAAAGATCTTTCAGGAGTGCAGGAGCAGCATTGCGTCTCCAAGAAAGTGGTCTTCTTACTGCTGATGCTATGGACAAAGCTGATGAAGCAACCATTAAAAGCTTGATTTACCCGGTTGGATTTTATTCTACAAAGGCTAGGAATTTGAAGAAGATTGCAAAAATATGTCTTATGAAGTATGGTGGGGATATACCTAGATCATTGGAGGAGCTACTTCTACTACCTGGCATAGGTCCTAAGATTGCGCATTTGATCATGATTATGGCATGGAACGATGTTCAGGGGATATGTGTAGATACTCACGTGCATCGCATTTGCAATCGGCTTGGATGGGTGTCTGGAAAAGGCTCAAAACAGATTGGAGACAAGCCTCTCATTTTGGTTTTTCCTCGTTTATTTGCTATAACTGATTCTAAGAATGCTTCCATTGCTGAAGTTTGGGATTTGGTAAATGGGTCCTCGATTTTGAACTTTTGTTGGAATTTTAAGGTATATGGAATTAATGAATGGGCAGCCCTCTCCAATTTGATCCCTTCCATTCACCTCACTGATTGCCAGGGCAAATGGATTTGGAAGCTAGATGCAAAGGAATCCTTCTCATCAAAATCTTTGGTTACAAGCCTTGTATCCGGAAATCAATCACAAACCAAGGAGTTATACAAAAAGATTTGGAAGGAGCCCTGCCCTAAGATGATAAAGCTTTTTTCGTGGGAGATCAGCCATTCCTGTTTTAATACCCTTGATAGACTTCAAAAGAGATGCCCTTGTTATCACTCCCCTAGTACTGTCTTTGCAAGAAAGCAGGGGAATCTCTCAGCCACATCCTTATACACTGCTCGTTCACAAGGAAAATTTGGAATGAGATTTTTGCACCCTCTGGGGTGGAGCATTGCTCTGCCGACGTTTCTTCCTCTTCTTACTCTTTCTGCAAATTCTTCCTCCATAGTCACTTTGCAAATCTGCCTCCTCAAGAAAACATCCACTCCTGAAGAAACTCGAGTGGCGTTAGAACTGTGGCTGCCGAAGGAAGAATGGGTTCCAATTAATCCTCTTCTGGTTGGATTTGGACAGACTATCTGCACTCCCCTTAGACCCAAATGTGGAAATTGCAGTGTTAGCGACTTGTGTCCATCTGCATTCAAGGAGTCTTCAAGCCCATCTCCCAAATTAAAGCGTTCAAGTTCCACCAAAAAGCTATGA 2259 43.56 QNALCHAILRDLVSDKASSPIIHFDQPIWGFHKAKFWNLEPGPFLNWIVLPMAMFLTCPIRTPVLSIAFARRITCNGMSKGSLSSLSTSSNKVPPESGVKSSNGVSESETRVFVRRRVKKNAEVQDSGLEVEPNVDAKRCCPPNIEDFAFKRTKDSPGSKSGKKFIKRLPRLVLVLRHAMRPVSAWQVKPTSRRSSAASGHRCQPTSGEVSRSFWTADCLGKQFYIHVWKWKYATIEGKSKPPLDPLLTEIEDSNPTRQKGIAEGGKPPANWEKVLEGIREMRSSEEAPVDTMGCGQAGSTLPPKERRFSVLASSLLSSQTKDHVTHGKPRAVHYSLFPRDVKLSLLIFSLIDKRSFRSAGAALRLQESGLLTADAMDKADEATIKSLIYPVGFYSTKARNLKKIAKICLMKYGGDIPRSLEELLLLPGIGPKIAHLIMIMAWNDVQGICVDTHVHRICNRLGWVSGKGSKQIGDKPLILVFPRLFAITDSKNASIAEVWDLVNGSSILNFCWNFKVYGINEWAALSNLIPSIHLTDCQGKWIWKLDAKESFSSKSLVTSLVSGNQSQTKELYKKIWKEPCPKMIKLFSWEISHSCFNTLDRLQKRCPCYHSPSTVFARKQGNLSATSLYTARSQGKFGMRFLHPLGWSIALPTFLPLLTLSANSSSIVTLQICLLKKTSTPEETRVALELWLPKEEWVPINPLLVGFGQTICTPLRPKCGNCSVSDLCPSAFKESSSPSPKLKRSSSTKKL 752
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33739565 33752072 + Maker00005241 Lcy11g1140 647041

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1140 752 Gene3D - 667 735 IPR023170 -
Lcy11g1140 752 ProSitePatterns Endonuclease III iron-sulfur binding region signature. 713 729 IPR004035 -
Lcy11g1140 752 SUPERFAMILY DNA-glycosylase 676 741 IPR011257 GO:0003824(InterPro)|GO:0006281(InterPro)
Lcy11g1140 752 MobiDBLite consensus disorder prediction 732 752 - -
Lcy11g1140 752 Gene3D Hypothetical protein; domain 2 304 440 - -
Lcy11g1140 752 Gene3D - 441 488 IPR023170 -
Lcy11g1140 752 SMART endo3end 355 498 IPR003265 GO:0006284(InterPro)
Lcy11g1140 752 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 256 466 - GO:0000703(PANTHER)|GO:0003906(PANTHER)|GO:0005634(PANTHER)|GO:0006285(PANTHER)|GO:0006296(PANTHER)|GO:0042644(PANTHER)
Lcy11g1140 752 MobiDBLite consensus disorder prediction 188 208 - -
Lcy11g1140 752 CDD ENDO3c 358 471 IPR003265 GO:0006284(InterPro)
Lcy11g1140 752 SUPERFAMILY DNA-glycosylase 279 470 IPR011257 GO:0003824(InterPro)|GO:0006281(InterPro)
Lcy11g1140 752 Pfam Helix-hairpin-helix motif 412 439 IPR000445 GO:0003677(InterPro)
Lcy11g1140 752 SMART ccc3 712 732 IPR003651 GO:0051539(InterPro)
Lcy11g1140 752 Pfam HhH-GPD superfamily base excision DNA repair protein 369 472 IPR003265 GO:0006284(InterPro)
Lcy11g1140 752 MobiDBLite consensus disorder prediction 81 105 - -
Lcy11g1140 752 ProSitePatterns Endonuclease III family signature. 415 444 IPR004036 -
Lcy11g1140 752 Hamap Endonuclease III-like protein 1 [NTHL1]. 268 735 IPR030841 GO:0003906(InterPro)|GO:0005634(InterPro)|GO:0006281(InterPro)|GO:0006285(InterPro)|GO:0019104(InterPro)
Lcy11g1140 752 MobiDBLite consensus disorder prediction 187 208 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1140 K10773 - - csv:101212347 351.673
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1140 Lcy-Chr11:33739565 Lcy5g0016 Lcy-Chr5:400059 8.23E-27 dispersed
Lcy11g1140 Lcy-Chr11:33739565 Lcy3g1947 Lcy-Chr3:46639335 5.85E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1201 . . . . . . . . . . . Cma14g01469 . Car14g01306 . . Cpe03g01238 Bhi01g02693 . . . Hepe05g1227 . Lcy11g1140 . . . . . . . . . . Cone11ag0617 . . . Cme07g01894 . . Bda11g00458 . . . . Bma06g01418 . . Cmo14g01508 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010237 1 4 0 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 32