Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1142 ATGGATTACGACGACAGCCTCCCACTGAGCGAGCGACCGGAGTGGTCGGACGTAACTCCGCTGCCGCAGGATGATGGTCCGAATCCGATTGTCGCGATCGCTTACAAAGAAGACTTCGTTGAGGTCATGAATTACTTCCGAGCTGTTTATCGAGCAGACGAGCGTTCTCCTCGCTCTCTCCACCTCACTGCCGAAGCCATTGCCATGAATCCTGGCAATTACACTATCCTTGATGTGACCCCTTCAATGAAAGAAATGTCGGTTCCTCTCATGCCCTTCATCCTTGAAGCCTTGGTTGGAGTTTTTGACTTCTTTGCCTTCAGTTTCCAGAGAGAATTTCCTAGGAGAATCAAAGATTGTGTTTGGCATTTCAGGCGTTTGATACTCGAGGCTCTTAATGTTGATTTACATGTTGAACTAGATTTCCTTGACGACATTGCTGAGTCTAACACCAAAAACTATCAGATATGGCATCATAGGCGATGGGTTGCTCAGAAACTGGGAACTAATGCTTCAAGCAAAGAGCTTAAATTCACCAAAAATATTCTCTCCCTTGATTCCAAAAACTATCATGCCTGGTCTCATAGACAGTGGGTCCTTCAGGCACTGGGTGGATGGGAAGATGAGCTTGACTATTGTCAAGAGCTCCTAGAAGAAGATATTTTTAATAATTCTGCATGGAATCAGGTTGGCAACATGTTTTATATCTGCTTCTTGATCCTTGATTTTAACCCAAATAATTGGATTGGAAGCATTTATCCTGAAGATGAATGGAAGCAAGAAGGAGGGAAAGCCCTTAAGGGGGATTGTATCCTTGAGCTTGTTTTGTTTCTTTTCATTGATCAGTGA 849 43.93 MDYDDSLPLSERPEWSDVTPLPQDDGPNPIVAIAYKEDFVEVMNYFRAVYRADERSPRSLHLTAEAIAMNPGNYTILDVTPSMKEMSVPLMPFILEALVGVFDFFAFSFQREFPRRIKDCVWHFRRLILEALNVDLHVELDFLDDIAESNTKNYQIWHHRRWVAQKLGTNASSKELKFTKNILSLDSKNYHAWSHRQWVLQALGGWEDELDYCQELLEEDIFNNSAWNQVGNMFYICFLILDFNPNNWIGSIYPEDEWKQEGGKALKGDCILELVLFLFIDQ 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33759890 33765440 - Maker00005279 Lcy11g1142 647043

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1142 282 SUPERFAMILY Protein prenylyltransferase 3 76 - -
Lcy11g1142 282 SUPERFAMILY Protein prenylyltransferase 121 235 - -
Lcy11g1142 282 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 171 205 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Lcy11g1142 282 Pfam Protein prenyltransferase alpha subunit repeat 139 166 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Lcy11g1142 282 Pfam Protein prenyltransferase alpha subunit repeat 206 229 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Lcy11g1142 282 Pfam Protein prenyltransferase alpha subunit repeat 173 203 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Lcy11g1142 282 Gene3D Protein prenylyltransferase 6 79 - -
Lcy11g1142 282 MobiDBLite consensus disorder prediction 1 23 - -
Lcy11g1142 282 Gene3D Protein prenylyltransferase 119 244 - -
Lcy11g1142 282 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 135 169 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Lcy11g1142 282 PANTHER PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT 16 229 - GO:0004660(PANTHER)|GO:0004662(PANTHER)|GO:0005737(PANTHER)|GO:0005953(PANTHER)|GO:0005965(PANTHER)|GO:0018343(PANTHER)|GO:0018344(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1142 K05955 - - csv:101212104 333.569
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1200 . . . . . . . . . . . Cma14g01470 . . Sed05g1558 . . Bhi01g02690 Tan10g1287 Cmetu04g0591 . Hepe05g1229 . Lcy11g1142 . . . . . . . . . . . . . . . . Blo07g00087 Bda11g00457 . . Bpe13g00739 . . . . Cmo14g01509 . . . . . . . . . . . . . Cla07g01486 Cam07g1582 Cec07g1682 Cco07g1643 Clacu07g1573 Cmu07g1541 Cre07g1918 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008182 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 2 1 1 35