Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1144 ATGTGTTATCCACTTTCAATTTTATCCTTAGGAAAACAACTATATAAGCACCTATCATTCTTCTTTCTCATCACTCATAGGTACCAATTTCTTTACGAAATGGCTTGGTTTCTTAGCTTGCTCCTCTTCTTTCTCGTCTCTTCTGCTACTGCTTGCGATCGTTGTATTCATCAATCCAAAGCTACCCACTATTATGGCGATAACCCTACTTCATATGGAGGAGCATGTGGTTATGGAAACTTAGCATTGGAGTTTACCGATGGCTACTTTTCAGCTGCTGTGCCTTCTCTCTATAAAAATGGAGCCGGTTGCGGTGCATGTTTTCAAGTAAGATGTAAAGATAAAACATTATGTAACACCTTCGGAACCAAAGTAGTATTAACAGATCAAAATTATGATACTAGAGCAGATTTTGTTCTCAGTAGAAAAGCTTTCTCTGCCATGGCTTTAAACGGAAAAGGAGAAGACCTTTTAAATTCTGGGATTGTGGACATAGAATATAAGAGGATACCTTGTGATTACAAAAACAGAAATTTCGCTATACGAGTGGAAGAATCAAGTAATTATCCAAACTATTTAGCCATTAAACCTTTGTACCAAGGTGGCCAAACAGAGATAGTGGCTCTTGAGATAACTAAGGTTGGTTCTTCCAATTGGGTGAGCTTAAAGAGAAGCTACGGAGTTGTTTGGGATACTAATAAGGTACCAACAGGAACACTACAGATGAGAATGACAGTAATTTCAGGATATGATAAGAAATGGTTGTTGGCAAAGTATTACGTGCTCCCTGCTGATTGGAAAACTGGAGTCATCTACTATACAGGAGTTCAAATTAATGACATTGCCAAAGAGAATTGTCCTGCATCACAGTGCGGTGATATACCATGGAAATGA 894 38.26 MCYPLSILSLGKQLYKHLSFFFLITHRYQFLYEMAWFLSLLLFFLVSSATACDRCIHQSKATHYYGDNPTSYGGACGYGNLALEFTDGYFSAAVPSLYKNGAGCGACFQVRCKDKTLCNTFGTKVVLTDQNYDTRADFVLSRKAFSAMALNGKGEDLLNSGIVDIEYKRIPCDYKNRNFAIRVEESSNYPNYLAIKPLYQGGQTEIVALEITKVGSSNWVSLKRSYGVVWDTNKVPTGTLQMRMTVISGYDKKWLLAKYYVLPADWKTGVIYYTGVQINDIAKENCPASQCGDIPWK 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33797473 33799277 - Maker00005193 Lcy11g1144 647045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1144 297 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 73 177 IPR007112 -
Lcy11g1144 297 Pfam Lytic transglycolase 92 167 IPR009009 -
Lcy11g1144 297 PRINTS Expansin/Lol pI family signature 160 176 IPR007118 GO:0005576(InterPro)
Lcy11g1144 297 PRINTS Expansin/Lol pI family signature 94 112 IPR007118 GO:0005576(InterPro)
Lcy11g1144 297 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576(InterPro)
Lcy11g1144 297 PRINTS Expansin/Lol pI family signature 260 274 IPR007118 GO:0005576(InterPro)
Lcy11g1144 297 PRINTS Expansin/Lol pI family signature 219 233 IPR007118 GO:0005576(InterPro)
Lcy11g1144 297 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 191 274 IPR007117 -
Lcy11g1144 297 SUPERFAMILY PHL pollen allergen 177 273 IPR036749 -
Lcy11g1144 297 PANTHER EXPANSIN-B3 39 280 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Lcy11g1144 297 Pfam Expansin C-terminal domain 181 256 IPR007117 -
Lcy11g1144 297 SUPERFAMILY Barwin-like endoglucanases 41 175 IPR036908 -
Lcy11g1144 297 CDD DPBB_EXLA_N 49 174 - -
Lcy11g1144 297 Gene3D - 45 173 IPR036908 -
Lcy11g1144 297 Gene3D - 174 279 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1144 Lcy-Chr11:33797473 Lcy3g0809 Lcy-Chr3:29194590 2.02E-149 dispersed
Lcy11g1144 Lcy-Chr11:33797473 Lcy11g1145 Lcy-Chr11:33820561 3.38E-107 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1144 - - - 0.0