Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1146 ATGGCTCTCTATCTCGGTTTTCTCTTCTTCCTTGTTTCTTCCGCCGCTGCTGTTTGTGATCGTTGTGTTCATCAATCCAAAGCTACTTTTTTCTATGATGATACAGCTATCCAACGTGGGGCATGTGGATATGGTCCTTTGGCACTTGAAATGTCTAATGGATATGTTGCTGGTGCTGTGTCTTCCCTTTATGAAGAGGGAGCTGCATGTGGTGTCTGTTTCCAGGTGAGATGCAAGGACAAAAGATTTTGCACCACTACTGGAACTAAAGTGGTTGTAACAGATAAAAATAACGATAACAAATATGACTTAGTCCTCAGTAAGAAAGCATACTCTGCCATGGCTGTAAAGAATAAGGCTAGTATACTTTTGAGTGGTGGATCAATTGATGTGGAGTACAAGAGGATACCTTGTACCTACAGAAATAAGAATTTGTTAGTGCGAGTGGAGGAAATGAGTCAAAAGCCATACTACATGGCCATTAAATTTATGTACCAAGGTGGCCAAACTGAAATAAAAGCAGTTGAAATAGCTGAGGCTGGTTCATCAGATTGGGAACCCATGTATAGAAATTATGGTGCCGTTTGGGATGTACACAAACAACTTGAGGGAGCTTTGCAATTGAAGATAACGGTAGCTTCAGGGCTCAATAATGAGAATACATATTGGACAAATAATGATCTCCCTGAATATTGGGAAACTGGAGAAATCTATGATACTGGAATCCAAATCAACGATATTGCTAAAGAAACCTGCCCACCGAAGCAGTGTGGTGACTTGCCATGGTATTAA 792 40.66 MALYLGFLFFLVSSAAAVCDRCVHQSKATFFYDDTAIQRGACGYGPLALEMSNGYVAGAVSSLYEEGAACGVCFQVRCKDKRFCTTTGTKVVVTDKNNDNKYDLVLSKKAYSAMAVKNKASILLSGGSIDVEYKRIPCTYRNKNLLVRVEEMSQKPYYMAIKFMYQGGQTEIKAVEIAEAGSSDWEPMYRNYGAVWDVHKQLEGALQLKITVASGLNNENTYWTNNDLPEYWETGEIYDTGIQINDIAKETCPPKQCGDLPWY 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33830296 33832371 + Maker00005227 Lcy11g1146 647047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1146 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 240 IPR007117 -
Lcy11g1146 263 SUPERFAMILY PHL pollen allergen 143 239 IPR036749 -
Lcy11g1146 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 143 IPR007112 -
Lcy11g1146 263 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576(InterPro)
Lcy11g1146 263 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576(InterPro)
Lcy11g1146 263 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576(InterPro)
Lcy11g1146 263 PRINTS Expansin/Lol pI family signature 126 142 IPR007118 GO:0005576(InterPro)
Lcy11g1146 263 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576(InterPro)
Lcy11g1146 263 Pfam Lytic transglycolase 60 133 IPR009009 -
Lcy11g1146 263 SUPERFAMILY Barwin-like endoglucanases 8 142 IPR036908 -
Lcy11g1146 263 Pfam Expansin C-terminal domain 152 215 IPR007117 -
Lcy11g1146 263 PANTHER EXPANSIN-B3 8 246 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Lcy11g1146 263 Gene3D - 140 245 IPR036749 -
Lcy11g1146 263 Gene3D - 12 139 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1146 Lcy-Chr11:33830296 Lcy3g0819 Lcy-Chr3:29455016 4.61E-157 dispersed
Lcy11g1145 Lcy-Chr11:33820561 Lcy11g1146 Lcy-Chr11:33830296 4.11E-174 tandem
Lcy11g1146 Lcy-Chr11:33830296 Lcy6g2003 Lcy-Chr6:42665910 5.06E-14 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1146 - - - 0.0