Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1150 ATGCCAAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCAGATGACGAGAAGCGTGAGCTTGTTTTCAAGGAAGATGGTCAGGAGTATGCCCAGGTTCTCAGAATGTTAGGGAATGGTCGGTGTGAGGCGATGTGCATAGATGGGACAAAGCGTCTTTGCCATATCCGGGGAAAGATGCACAAAAAGGTTTGGATCGCAGCTGGCGATATAATACTTGTGGGTCTTCGCGACTATCAGGATGACAAAGCTGATGTTATCCTCAAGTATATGCCTGATGAAGCAAGGCTGTTGAAGGCATATGGTGAACTTCCTGAGAGCACACGTCTCAACGAGGGTATTGCTGGTGGTATCGATGATGAGGATGATGGTGGCGCTGATGACTATCTCGAGTTCGAGGATGAAGATATCGATAAGATTTAG 438 47.03 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33863644 33864081 + Maker00005156 Lcy11g1150 647051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1150 145 Pfam Translation initiation factor 1A / IF-1 32 93 IPR006196 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Lcy11g1150 145 ProSiteProfiles S1 domain IF1 type profile. 22 96 IPR006196 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Lcy11g1150 145 Gene3D - 2 145 IPR012340 -
Lcy11g1150 145 FunFam Eukaryotic translation initiation factor 1A 2 145 - -
Lcy11g1150 145 SUPERFAMILY Nucleic acid-binding proteins 2 144 IPR012340 -
Lcy11g1150 145 CDD S1_IF1A 33 109 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Lcy11g1150 145 PANTHER EIF-1A 1 145 IPR001253 GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005737(PANTHER)|GO:0006413(PANTHER)|GO:0006413(InterPro)
Lcy11g1150 145 ProSitePatterns Eukaryotic initiation factor 1A signature. 41 63 IPR018104 GO:0003743(InterPro)|GO:0006413(InterPro)
Lcy11g1150 145 MobiDBLite consensus disorder prediction 1 25 - -
Lcy11g1150 145 SMART eIF1neu4 28 110 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Lcy11g1150 145 Hamap Translation initiation factor 1A [eif1a]. 16 110 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Lcy11g1150 145 NCBIfam translation initiation factor eIF-1A 14 110 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1150 Lcy-Chr11:33863644 Lcy4g0496 Lcy-Chr4:6049836 2.22E-95 dispersed
Lcy11g1150 Lcy-Chr11:33863644 Lcy8g1380 Lcy-Chr8:40521399 1.41E-100 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1150 K03236 - rcu:8265575 262.307