Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1151 ATGTCTTCGCAAGAGCCACTCCCCAAATGGGCTTCAAAGCCTTGTGTAATGGGAATCGATGAAGCTGGTCGAGGCCCTGTTTTAGGCCCAATGGTGTATGGATGCCTGTACTGCGCTAGTTCTTATTTGGAAGAACTCTCGTCTTTGAATTTTGCAGACTCAAAAACGTTGAAAGAAGAGAAGAGGGAGGAATTGTTTGAAAATTTGAAGGCTAATGAATCTATTGGATGGGCTGTTGATGTCATAGATCCACGGGAGCTTTCATCCAAAATGCTAAGCAAAGTAAAGATAAACCTAAATGAAATATCACATGACTCTGCAATGGGTCTGGTGACGAAGGTTCTAGGCATGGGAGTTCTTTTAACTGAGGTTTATGTGGATACTGTTGGAGATGCTGAAAAGTACAGAATAAAATTATCTGAAAAATTTCCCAATGTAAAATTTGTAGTTGCAAAGAAGGCTGATAGTTTATATCCTGTTGTCAGTGGGGCAAGCATAGTCGCAAAGGTCACAAGAGATCGTGCGTTGCGGGAATGGGCATTGGAGGAAACAGCTGAAAACATGCATAGAAACTTTGGTTCTGGATACCCTGGAGATCCGACAACTAAATCCTGGTTAGAAGATCACAAGCACTCGGTGTTTGGGTTTCCCACATTGGTCCGCTTCAGTTGGGGTACCTGCACTTCATATTTCAAAGACATTGTTGAAGTATCATGGGAATCAGACAAAGTGGATGAAGATGGGCCTACAGCTGGAAGTGGTAAGAAACAATTAAGACTAAGCAACGTCGGTATCACCACATCCAAGAGAAAGAGTGAAGAAATTGAATCAAACGCCAAAGGAAGGTGCAAGTTTTTCCAGGCTAGAAAGCTTGAACAACTCACTCACTTCTGA 894 42.39 MSSQEPLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCASSYLEELSSLNFADSKTLKEEKREELFENLKANESIGWAVDVIDPRELSSKMLSKVKINLNEISHDSAMGLVTKVLGMGVLLTEVYVDTVGDAEKYRIKLSEKFPNVKFVVAKKADSLYPVVSGASIVAKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKSWLEDHKHSVFGFPTLVRFSWGTCTSYFKDIVEVSWESDKVDEDGPTAGSGKKQLRLSNVGITTSKRKSEEIESNAKGRCKFFQARKLEQLTHF 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33865048 33869342 + Maker00005287 Lcy11g1151 647052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1151 297 FunFam Ribonuclease 188 239 - -
Lcy11g1151 297 Gene3D - 1 186 IPR036397 GO:0003676(InterPro)
Lcy11g1151 297 NCBIfam ribonuclease HII 16 228 IPR004649 GO:0004523(InterPro)|GO:0016070(InterPro)
Lcy11g1151 297 Pfam Ribonuclease HII 17 227 IPR024567 GO:0004523(InterPro)
Lcy11g1151 297 CDD RNase_HII_eukaryota_like 17 233 - -
Lcy11g1151 297 FunFam Ribonuclease 1 186 - -
Lcy11g1151 297 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 14 236 IPR024567 GO:0004523(InterPro)
Lcy11g1151 297 Gene3D Ribonuclease hii. Domain 2 187 235 IPR023160 GO:0004523(InterPro)
Lcy11g1151 297 PANTHER RIBONUCLEASE H2 SUBUNIT A 4 277 IPR001352 GO:0003723(InterPro)|GO:0004523(PANTHER)|GO:0004523(InterPro)|GO:0006298(PANTHER)|GO:0032299(PANTHER)|GO:0043137(PANTHER)
Lcy11g1151 297 SUPERFAMILY Ribonuclease H-like 15 232 IPR012337 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1151 Lcy-Chr11:33865048 Lcy4g1085 Lcy-Chr4:20889960 1.95E-16 dispersed
Lcy1g2558 Lcy-Chr1:46786133 Lcy11g1151 Lcy-Chr11:33865048 9.46E-19 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1151 K10743 - csv:101210143 568.54