Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1153 ATGTATGGTTGGAGAGGTGGATTGTTTGTGGAATTGGTTCTTTTTGCAGATATGTGTTTGTTGGTGTCAGGTTTAGGTTCAATGTCTTCTGTTGCTGTTTCTTATGGTGAGAAAGGGCCTGTTTTCTGTGGTTTAAAGTCAGATGGGTCTCATCTTGTGAGCTGTTTTGGTTCAAACTCAGCCATAACTTATGGAACCCCTTCTCATTTCCCATTCATTGGTCTAACTGCTGGTGATGGGTTTGTCTGTGGGCTTCTTTTGGATTCCAATCAACCTTACTGTTGGGGAAGCAGTGGTTATGTTCAAATGGGTGTTCCTCAGCCCATGATCAAAGCAGCTCAATACCTGGAAATCAGTGCTGGTGATTACCATCTCTGTGGACTCCGAATGCCTCTGACTGGAAGGCGTAGGAACATGTCTTTTGTGGATTGTTGGGGTTACAACATGACGAGAACCTTTGCGTTTGATGGCCCGATTGAATCGATCTCGGCAGGGTCTGAGTTCAACTGTGGACTGTTTTCTCTTAATAGAACCGTTTTCTGTTGGGGTGATGAGACAAGCAGCCGGGTAATCAGTTTGATACCTAAAGATAAGAGGTTTCAAAAGATTGCATCTGGTGGATATCATGTTTGCGGGATTCTAGAGGGCGCAAAGGCGAGAGCATTCTGTTGGGGAAGGAGCTTAGGCATTGAAGAAGAGATCTCAGTTGCATATTCAGGTGAAGGAAATGTAGACTTGGTTCCAGTTGATCCATTAGACTCTGTTGTTGGGGGCAAATTCCATGCTTGTGGAATCAAGAGCTTGGACCGTGGTGTGATTTGTTGGGGTTTTACGGTCAAACCGAGCACTCCAGCACCGGATGGGATTAAAGTTTACGACATCGCAGCTGGAGATTACTTCACATGTGGAGTTCTAGCTGAAAAATCTCTTCTGCCTGTTTGCTGGGGCCTTGGATTTCCTACTTCTCTACCTTTAGCTGTCTCGCCTGGAATATGTAAAGCAACTCCTTGCGCTCCTGGTTTCTACGAAATAAGCCAAGACAACGCTCGGTGTAAGTCGCCAAATTTTCATGTGTGTATGCCCTGCAGTACTGTTTGCCCTCCTGAGATGTACCAAAAATTTGAGTGCTCCTCAAAATCTGATAGGCAGTGTGAATATAACTGTTCAAGTTGCTTTTCTTCTGAATGCTTCTCAAACTGCTCATCGATTTCAAATGGTATGACAGGGAAGAAAAATGAGAAGTTTTGGTCAATGCAGCTTCCAGTTCTTGTAGCTGAGATTGCTTTTGCTGTGTTTTTGGTAGCTATTGTGTCTTTAACTGCAATCTTATACGTTCGATACAAGTTACGGAACTGCCATTGCTCGGGGAAGGAGTTGAAGTCGAAGAAACACAAAGGGACTGCTTCTTCCTTCCAGAAGGAAAACTACAAAATACGTCCTGACTTAGATGAGCTGAAAATAAGGAGGGCTCAGATGTTCACCTATGAAGAACTCGAGAGAGCGACGTGTGGATTTAAGGAAGAGTCTATTGTGGGAAAGGGAAGTTTCTCTTGTGTTTTTCGAGGTGTTTTAAAGGACGGGACAGTCGTAGCAGTCAAACGGGCTATAATGTCTCCCAACATGCAGAAGAATTCAAAAGAGTTTCACACTGAACTTGACTTACTCTCAAGATTAAACCATGCCCATTTGCTTAATCTGCTAGGTTATTGTGAAGAAGGTGGAGAGAGGCTTCTCGTTTATGAGTTCATGGCTCATGGTTCCTTGCATCAGCACCTCCATGGCAAGAACAAGACCTTAAAAGAGCAATTGGATTGGATAAGAAGGGTCACAATTGCAGTCCAAGCAGCCAGGGGAATCGAATACTTGCACGGCTATGCTTGTCCTCCTGTCATTCATCGAGACATCAAGTCGTCAAACATTCTCATCGACGAAGAGCATAATGCTCGAGTTGCCGATTTTGGCTTGTCATTGTTGGGACCAACCGATAGTAGCTCTCCATTAGCCGAGTTACCAGCCGGGACTCTTGGCTATCTTGATCCTGAATACTATAGACTTCATTACCTTACCACCAAATCTGATGTCTATAGCTTTGGTGTTTTGCTACTAGAAATTCTCAGTGGTAGAAAAGCCATTGATATGCAATATGAAGAAGGGAACATAGTAGAATGGGCAGTGCCTCTGATCAAATCTGGAGATATCTCTTCAATTTTAGATCCGATATTAAAACCGCCATCCGATATCGAGGCCTTGAAGAGGATTGCAAATGTAGCCTGTAAATGTGTGAGAATGAGGGCGAAGGAGAGGCCATCAATGGACAAAGTGACAACTGCATTGGAGCGTGCTCTTGCCCAATTAATGGGAAGCCCATGTAACGAACAACCAATCTTACCAACCGAGGTGGTTTTGGGAAGCAGTAGACTACACAAAAAGTCATCTCAAAGATCATCGAACCGTTCGGTCTCGGAAACAGACATAGCAGAAGCTGAAGATCAAAGGTTCGAGTTCAGAGCTCCGTCGTGGATCACATTCCCGAGCGTGACATCGTCCCAGAGGAGGAAATCCTCAGCGTCAGAAGCAGATGTTGAAGGAAAGAATTTGGAAGGAGGGAGAAATGTAGGGAACTGTGGAGGTGTTGGGGATGGATTGAAGAGTTTAGAGGAAGAGATTGGGCCTGCTTCCCCTCAGGAAAAGTTGTTCTTGGAGCACAATTTCTAA 2715 44.53 MYGWRGGLFVELVLFADMCLLVSGLGSMSSVAVSYGEKGPVFCGLKSDGSHLVSCFGSNSAITYGTPSHFPFIGLTAGDGFVCGLLLDSNQPYCWGSSGYVQMGVPQPMIKAAQYLEISAGDYHLCGLRMPLTGRRRNMSFVDCWGYNMTRTFAFDGPIESISAGSEFNCGLFSLNRTVFCWGDETSSRVISLIPKDKRFQKIASGGYHVCGILEGAKARAFCWGRSLGIEEEISVAYSGEGNVDLVPVDPLDSVVGGKFHACGIKSLDRGVICWGFTVKPSTPAPDGIKVYDIAAGDYFTCGVLAEKSLLPVCWGLGFPTSLPLAVSPGICKATPCAPGFYEISQDNARCKSPNFHVCMPCSTVCPPEMYQKFECSSKSDRQCEYNCSSCFSSECFSNCSSISNGMTGKKNEKFWSMQLPVLVAEIAFAVFLVAIVSLTAILYVRYKLRNCHCSGKELKSKKHKGTASSFQKENYKIRPDLDELKIRRAQMFTYEELERATCGFKEESIVGKGSFSCVFRGVLKDGTVVAVKRAIMSPNMQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYEFMAHGSLHQHLHGKNKTLKEQLDWIRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVADFGLSLLGPTDSSSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQYEEGNIVEWAVPLIKSGDISSILDPILKPPSDIEALKRIANVACKCVRMRAKERPSMDKVTTALERALAQLMGSPCNEQPILPTEVVLGSSRLHKKSSQRSSNRSVSETDIAEAEDQRFEFRAPSWITFPSVTSSQRRKSSASEADVEGKNLEGGRNVGNCGGVGDGLKSLEEEIGPASPQEKLFLEHNF 904
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33881218 33883932 - Maker00005199 Lcy11g1153 647054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1153 904 ProSitePatterns Protein kinases ATP-binding region signature. 511 533 IPR017441 GO:0005524(InterPro)
Lcy11g1153 904 Pfam Protein tyrosine and serine/threonine kinase 508 777 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy11g1153 904 CDD STKc_IRAK 511 780 - -
Lcy11g1153 904 ProSitePatterns Serine/Threonine protein kinases active-site signature. 630 642 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy11g1153 904 FunFam Receptor protein kinase CRINKLY4 583 785 - -
Lcy11g1153 904 SUPERFAMILY Protein kinase-like (PK-like) 487 778 IPR011009 -
Lcy11g1153 904 Gene3D Phosphorylase Kinase; domain 1 476 582 - -
Lcy11g1153 904 SMART serkin_6 505 782 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g1153 904 FunFam Serine/threonine-protein kinase-like protein CR4 24 191 - -
Lcy11g1153 904 Gene3D Transferase(Phosphotransferase) domain 1 583 790 - -
Lcy11g1153 904 Gene3D - 20 186 IPR009091 -
Lcy11g1153 904 ProSiteProfiles Protein kinase domain profile. 505 782 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g1153 904 FunFam serine/threonine-protein kinase-like protein CCR1 475 582 - -
Lcy11g1153 904 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 20 827 - -
Lcy11g1153 904 MobiDBLite consensus disorder prediction 806 822 - -
Lcy11g1153 904 MobiDBLite consensus disorder prediction 846 904 - -
Lcy11g1153 904 Gene3D - 187 328 IPR009091 -
Lcy11g1153 904 MobiDBLite consensus disorder prediction 806 825 - -
Lcy11g1153 904 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 336 384 IPR001368 GO:0005515(InterPro)
Lcy11g1153 904 SUPERFAMILY RCC1/BLIP-II 25 277 IPR009091 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1153 Lcy-Chr11:33881218 Lcy9g0533 Lcy-Chr9:16624107 2.01E-85 dispersed
Lcy12g0425 Lcy-Chr12:5181602 Lcy11g1153 Lcy-Chr11:33881218 1.57E-70 transposed
Lcy13g1503 Lcy-Chr13:33716892 Lcy11g1153 Lcy-Chr11:33881218 1.50E-64 transposed
Lcy1g1379 Lcy-Chr1:13363924 Lcy11g1153 Lcy-Chr11:33881218 4.99E-85 transposed
Lcy7g0019 Lcy-Chr7:206670 Lcy11g1153 Lcy-Chr11:33881218 2.04E-58 transposed
Lcy11g1153 Lcy-Chr11:33881218 Lcy2g1571 Lcy-Chr2:21454477 9.05E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65449 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1153 - - - 0.0