Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1158 ATGGCAAACAGTACGTACAACCCCTTTCTTTCTTCTCCCGCCCATCGTCGTGCATTTGAATTTGGATTTCGCACGATGGCTAGGTCTTTTCTGCAGGTAGCTGCTACGGAAGAGGTGGCTTCCCCTCTCCGAGTGGTTCAGATTGAAGGATTGGTTATATTGAAGATAATCAAGCACTGCAAGGAGTTTTCACCAGCCCTTGTGACTGGGCAACTTCTTGGGTTAGATGTTGGTAGCGTTCTTGAAGTCACTAATTGCTTTCCCTTCCCGACTCGGGAGGAGGATGAGGAGATTGAAGCAGATGGTGCTAATTACCAACTTGAAATGATGAGATGTCTGAGAGAAGTCAATGTTGACAATAATACTGTCGGATGGTATCAGTCAACCTTCTTAGGTTCATATCAGACTGTAGAGCTGATCGAGACCTTTATGAATTATCAGAGAGGAAGGAAGCACTTCTTCCAGTCCCTTGCTTCCTTCTTGAATAAGGAGGAAGGAAAGGAAGATCTTTATTCCTTCTGTACTGCCTTTGAAAGGCCAACAGAAAATATTAGGCGGTGTGTCTGCATAATTTATGACCCATCAAGGTCTAATCAAGGTGTCTTGGCTCTCAAAGCATTGAAGCTTTCAGATTCTTTTATGGAGCTTTACCGCAGCAACAACTTTACAGGAGAAAAGTTGAGGGAGAAGAACTTATCGTGGGTGGATATTTTTGAAGAAATACCTATCAAAGTTTCAAACTCAGCCCTCATTAGTGCTTTTATGACGGAGCTTGAAGCTGACTCTCCAGTCACCCAGTGTGATTATGACCGCCTGCAACTTTCAACTAATCCATTTATGGAGAGGAATGTGGAATTTCTGATTGAATGTATGGATGATTTGTCTGTGGAGCAGCAGAAGTTCCAATTCTATTATCGGAGCCTGACCCGTCAGCAAGCTCAGCAGCAGGCATGGCTTCAGAAGAGAAGGGCCGAGAACATGACGAGGAAGGCAGCAGGAGAAGAACCTCTCCCTGAGGAAGATCCTGCAAACCCCATCTTTAAACCACTCCCTGAGCCATCACGTTTGGATAGCTATCTCATAACGAATCAAATAGCAAACTACTGCAACCAAATTAACGGGGTTGCTGGACAGAGTTTCAACAGACTTCATTTGATGAAGGCTTTGCATGACAATTAA 1179 44.19 MANSTYNPFLSSPAHRRAFEFGFRTMARSFLQVAATEEVASPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIETFMNYQRGRKHFFQSLASFLNKEEGKEDLYSFCTAFERPTENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEADSPVTQCDYDRLQLSTNPFMERNVEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQAWLQKRRAENMTRKAAGEEPLPEEDPANPIFKPLPEPSRLDSYLITNQIANYCNQINGVAGQSFNRLHLMKALHDN 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33972466 33977721 + Maker00005140 Lcy11g1158 647059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1158 392 MobiDBLite consensus disorder prediction 323 337 - -
Lcy11g1158 392 ProSiteProfiles MPN domain profile. 46 179 IPR037518 -
Lcy11g1158 392 MobiDBLite consensus disorder prediction 322 349 - -
Lcy11g1158 392 CDD MPN_eIF3h 44 341 IPR027524 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Lcy11g1158 392 Gene3D Cytidine Deaminase, domain 2 8 269 - -
Lcy11g1158 392 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 43 147 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
Lcy11g1158 392 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 29 383 IPR050242 GO:0003743(PANTHER)|GO:0005829(PANTHER)|GO:0005852(PANTHER)|GO:0008237(PANTHER)|GO:0016282(PANTHER)|GO:0042788(PANTHER)
Lcy11g1158 392 SMART pad1_6 45 212 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
Lcy11g1158 392 Pfam C-terminal region of eIF3h 198 390 IPR045810 -
Lcy11g1158 392 Hamap Eukaryotic translation initiation factor 3 subunit H [EIF3H]. 41 392 IPR027524 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1158 K03247 - csv:101211860 640.188