Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy11g1158 | ATGGCAAACAGTACGTACAACCCCTTTCTTTCTTCTCCCGCCCATCGTCGTGCATTTGAATTTGGATTTCGCACGATGGCTAGGTCTTTTCTGCAGGTAGCTGCTACGGAAGAGGTGGCTTCCCCTCTCCGAGTGGTTCAGATTGAAGGATTGGTTATATTGAAGATAATCAAGCACTGCAAGGAGTTTTCACCAGCCCTTGTGACTGGGCAACTTCTTGGGTTAGATGTTGGTAGCGTTCTTGAAGTCACTAATTGCTTTCCCTTCCCGACTCGGGAGGAGGATGAGGAGATTGAAGCAGATGGTGCTAATTACCAACTTGAAATGATGAGATGTCTGAGAGAAGTCAATGTTGACAATAATACTGTCGGATGGTATCAGTCAACCTTCTTAGGTTCATATCAGACTGTAGAGCTGATCGAGACCTTTATGAATTATCAGAGAGGAAGGAAGCACTTCTTCCAGTCCCTTGCTTCCTTCTTGAATAAGGAGGAAGGAAAGGAAGATCTTTATTCCTTCTGTACTGCCTTTGAAAGGCCAACAGAAAATATTAGGCGGTGTGTCTGCATAATTTATGACCCATCAAGGTCTAATCAAGGTGTCTTGGCTCTCAAAGCATTGAAGCTTTCAGATTCTTTTATGGAGCTTTACCGCAGCAACAACTTTACAGGAGAAAAGTTGAGGGAGAAGAACTTATCGTGGGTGGATATTTTTGAAGAAATACCTATCAAAGTTTCAAACTCAGCCCTCATTAGTGCTTTTATGACGGAGCTTGAAGCTGACTCTCCAGTCACCCAGTGTGATTATGACCGCCTGCAACTTTCAACTAATCCATTTATGGAGAGGAATGTGGAATTTCTGATTGAATGTATGGATGATTTGTCTGTGGAGCAGCAGAAGTTCCAATTCTATTATCGGAGCCTGACCCGTCAGCAAGCTCAGCAGCAGGCATGGCTTCAGAAGAGAAGGGCCGAGAACATGACGAGGAAGGCAGCAGGAGAAGAACCTCTCCCTGAGGAAGATCCTGCAAACCCCATCTTTAAACCACTCCCTGAGCCATCACGTTTGGATAGCTATCTCATAACGAATCAAATAGCAAACTACTGCAACCAAATTAACGGGGTTGCTGGACAGAGTTTCAACAGACTTCATTTGATGAAGGCTTTGCATGACAATTAA | 1179 | 44.19 | MANSTYNPFLSSPAHRRAFEFGFRTMARSFLQVAATEEVASPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIETFMNYQRGRKHFFQSLASFLNKEEGKEDLYSFCTAFERPTENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEADSPVTQCDYDRLQLSTNPFMERNVEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQAWLQKRRAENMTRKAAGEEPLPEEDPANPIFKPLPEPSRLDSYLITNQIANYCNQINGVAGQSFNRLHLMKALHDN | 392 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 33972466 | 33977721 | + | Maker00005140 | Lcy11g1158 | 647059 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy11g1158 | 392 | MobiDBLite | consensus disorder prediction | 323 | 337 | - | - | |
Lcy11g1158 | 392 | ProSiteProfiles | MPN domain profile. | 46 | 179 | IPR037518 | - | |
Lcy11g1158 | 392 | MobiDBLite | consensus disorder prediction | 322 | 349 | - | - | |
Lcy11g1158 | 392 | CDD | MPN_eIF3h | 44 | 341 | IPR027524 | GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro) | |
Lcy11g1158 | 392 | Gene3D | Cytidine Deaminase, domain 2 | 8 | 269 | - | - | |
Lcy11g1158 | 392 | Pfam | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 43 | 147 | IPR000555 | GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro) | |
Lcy11g1158 | 392 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED | 29 | 383 | IPR050242 | GO:0003743(PANTHER)|GO:0005829(PANTHER)|GO:0005852(PANTHER)|GO:0008237(PANTHER)|GO:0016282(PANTHER)|GO:0042788(PANTHER) | |
Lcy11g1158 | 392 | SMART | pad1_6 | 45 | 212 | IPR000555 | GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro) | |
Lcy11g1158 | 392 | Pfam | C-terminal region of eIF3h | 198 | 390 | IPR045810 | - | |
Lcy11g1158 | 392 | Hamap | Eukaryotic translation initiation factor 3 subunit H [EIF3H]. | 41 | 392 | IPR027524 | GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro) |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy11g1158 | K03247 | - | csv:101211860 | 640.188 |