Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1159 ATGGCTTTCCTCCCACTTCTCGCCATTTCCCTTCTGGGATCCATGGCCTTTCTCCTCCACAATTGCATTGCGCTCGATGGGCTTTCCCCTCAGCTCAACGACGACATACTCGGTTTGATCGTCTTCAAGTCCGACCTCCACGACCCATCTTCCTTTCTCGCCTCCTGGAATGAAGACGACGACTCCCCTTGTTCTTGGAACTTCGTCAAATGCAACCCCATCAATGGCAGAGTTTCCGAGGTTTCCATCGATGGCTTGGGCTTGTCTGGCAGAATCGGAAGGGGGCTTGAGAAGTTGCAGCATCTCAAGGTATTGTCCCTTTCCGGCAATAACTTTACTGGCACTCTCAGTCCTGAGCTTGCTCTTCCCTCGAGTCTCGAGAGAGTTAATTTCAGCCGCAATGGTCTCTCTGGCCGAATTCCCACCTCTCTAATCGATATGTCGTCGGTTAGATTTCTTGATTTTTCTGATAATCTCTTCTCTGGGCCTCTTCCTGATGATTTGTTTCTCAATTGCTCTTCGCTTCATTATCTCTCTCTTGCGTCTAATATGCTTGAAGGCCCTGTCCCCAACACATTGCCCACAAGGTGTTTGTATTTAAACACTCTGAATCTTTCGAGCAATCGGTTCTCTGGTAGCTTGGATTTTGCACCTGGGTTTTGGTCTTTGACAAGGCTCAGGACATTGGATCTCTCAAACAATGCCCTCTCTGGATATCTCCCACAAGGGATTTCCGCCATTCATAACCTGAAAGAGCTCAAGCTGCAGAGCAATCAGTTCTCAGGGCCATTGCCAGCAGATTTGGGATTGTGCCTCCACTTGGCCACACTGGACGTCAGCCGCAACCGCCTCGCCGGGCCTCTACCGGAGTCGACGAAACACTTGACTTCGCTGACAGTCCTCAACATAGGATTCAACTCGTTTTCCGGGGAGTTCCCGGAGTGGATTGGGAACATGACGAGTTTGGAGTATGTGGATTTCTCAAGCAACGGCTTCATGGGCAGGCTTCCGTTGGCAATGGGGGGGTTGAGATCTGTGAAGTACATGAGTTTCTCAAACAACAGGCTGTCTGGGAGCATCCCAGAGACATTGAAGGAGTGCACAGAGCTGTGTGTGATCAAGCTGGAAGGGAATGGCCTCAATGGCGAGGTGCCAGAGGGGTTGTTCGAACTGGGATTGGAGGAGGTGGATTTGTCGAAGAATGAGCTGATTGGTTCGATCCCAGCAGGATCGAGCAGGCTGTACGAGAGGCTAAGGAGGATGGACCTGTCGAGGAACAGATTAGAAGGGAACTTTCCAGCGGAAATGGGATTGTACAGGAATTTGAAGTACTTGAATCTGTCGTGGAACAAGTTCAAGGCGAAGATTCCACCAGAAATGGGGATGTTTGAGAAGCTGAGTGTGTTGGACATTAGAAGCAGTGAGCTGCATGGATCAATCCCAGGAGAGTTGTGTGATTCTGGGAGTTTGGGAATTCTTCAGCTTGATGGAAACTCATTGATTGGTCCAATTCCAGATGAGATTGGAAACTGTCTCTCTCTTTACTTGCTGCTCCCTGTTGGTGGCATTTTTCCAAGCTTGGATCAAAGTGCTTTGCAAGGAAACTTAGGCCTCTGCTCCCCTTTGCTCAAAGGCCCTTGCAAAATGAATGTCCCTAAGCCCCTTGTTCTTGACCCCAATGCCTATCCCAACCAAATGGGATCAAACAGGCCTTCACAACAACAATACTCTTCTAATCCTTCTTCCCATCATGTCTTCTTCAGTGTCTCTGCCATTGTTTCCATCTCTGCTGCCACTTTGATTGCCATTGGGGTCCTTGTCATTACCTTGCTCAATGTCTCTGCTCGCAGGCGATCGCTTGCCTTTGTCGACAATGCCTTGGAAAGCATGTGCTCCAGCTCTTCCAAATCCGGGACTGTCACTGCAGGTAAGCTCATTTTGTTTGATTCCAACTCGAGGGCCTCCCCGAATTGGGTTAGCAACCATGAATCCTTGCTCAACAAGGCCTCTGAGATTGGTGCCGGAGTTTTCGGAACGGTTTATAAGGTTTCCTTGGGAGATCAAGGAGGAAGAAGAGATGTGGCTATCAAGAAGCTGGTGAAATCAAACATCATTCAAAATCCCGAAGATTTCGACCGCGAAATCCGAATCTTGGGGAAGGTCAAGCATCCCAATTTGATCAGCTTGAAGGGTTACTACTGGACTGCTCAAACTCAGCTCTTGCTTATGGAGTATGCCACCAATGGAAGTCTTCAAACTCAACTCCATGGAAGGCTTCCTTCAACTCCACCACTCTCTTGGGCCAACAGGTTCAAGATTGTGCTTGGGACAGCCAAAGGACTTGCACATTTACACCACTCATTCCGCCCGCCGATCGTTCACTACAATCTCAAGCCAAGCAACATCTTGCTCGACGAAAACTTCAACCCGAAGATCTCCGATTACGGGCTGGCAAGGCTGCTAACAAAGCTCGACAAACACGTCGTAAACAACAGATTCCAAAGTGCATTGGGGTACGTCGCACCAGAACTGGCATGCCAGAGCATAAGGGTGAACGAGAAATGCGACGTACACGGATTCGGGGTGATGATTCTGGAGATCGTGACGGGACGAAGGCCGGTGGAGTATGGAGAAGACAATGTGGTAATATTGACAGACCATGTGAGGTATTTGCTTGAGAGGGGGAATGTGTTGGATTGTGTAGATCCAAGTATGAGTGAATATTCAGAAGATGAAGTTGTGCCAATTCTGAAACTGGCTTTGGTATGCACTTCTCAAATTCCTTCAAGCAGGCCTTCAATGTCGGAAGTGGTGCAGATTCTGCAAGTGATAAAGGCTCCACTTCCACAGAGAATAGAAGCATTTTGA 2868 48.74 MAFLPLLAISLLGSMAFLLHNCIALDGLSPQLNDDILGLIVFKSDLHDPSSFLASWNEDDDSPCSWNFVKCNPINGRVSEVSIDGLGLSGRIGRGLEKLQHLKVLSLSGNNFTGTLSPELALPSSLERVNFSRNGLSGRIPTSLIDMSSVRFLDFSDNLFSGPLPDDLFLNCSSLHYLSLASNMLEGPVPNTLPTRCLYLNTLNLSSNRFSGSLDFAPGFWSLTRLRTLDLSNNALSGYLPQGISAIHNLKELKLQSNQFSGPLPADLGLCLHLATLDVSRNRLAGPLPESTKHLTSLTVLNIGFNSFSGEFPEWIGNMTSLEYVDFSSNGFMGRLPLAMGGLRSVKYMSFSNNRLSGSIPETLKECTELCVIKLEGNGLNGEVPEGLFELGLEEVDLSKNELIGSIPAGSSRLYERLRRMDLSRNRLEGNFPAEMGLYRNLKYLNLSWNKFKAKIPPEMGMFEKLSVLDIRSSELHGSIPGELCDSGSLGILQLDGNSLIGPIPDEIGNCLSLYLLLPVGGIFPSLDQSALQGNLGLCSPLLKGPCKMNVPKPLVLDPNAYPNQMGSNRPSQQQYSSNPSSHHVFFSVSAIVSISAATLIAIGVLVITLLNVSARRRSLAFVDNALESMCSSSSKSGTVTAGKLILFDSNSRASPNWVSNHESLLNKASEIGAGVFGTVYKVSLGDQGGRRDVAIKKLVKSNIIQNPEDFDREIRILGKVKHPNLISLKGYYWTAQTQLLLMEYATNGSLQTQLHGRLPSTPPLSWANRFKIVLGTAKGLAHLHHSFRPPIVHYNLKPSNILLDENFNPKISDYGLARLLTKLDKHVVNNRFQSALGYVAPELACQSIRVNEKCDVHGFGVMILEIVTGRRPVEYGEDNVVILTDHVRYLLERGNVLDCVDPSMSEYSEDEVVPILKLALVCTSQIPSSRPSMSEVVQILQVIKAPLPQRIEAF 955
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33979585 33984997 - Maker00005190 Lcy11g1159 647060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1159 955 Pfam Leucine Rich Repeat 101 120 IPR001611 GO:0005515(InterPro)
Lcy11g1159 955 Pfam Leucine Rich Repeat 441 461 IPR001611 GO:0005515(InterPro)
Lcy11g1159 955 Pfam Leucine Rich Repeat 297 319 IPR001611 GO:0005515(InterPro)
Lcy11g1159 955 Pfam Leucine Rich Repeat 225 245 IPR001611 GO:0005515(InterPro)
Lcy11g1159 955 Pfam Leucine Rich Repeat 249 269 IPR001611 GO:0005515(InterPro)
Lcy11g1159 955 Pfam Leucine Rich Repeat 346 366 IPR001611 GO:0005515(InterPro)
Lcy11g1159 955 SUPERFAMILY L domain-like 314 518 - -
Lcy11g1159 955 PANTHER OS05G0588300 PROTEIN 171 292 IPR050994 -
Lcy11g1159 955 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 746 950 - -
Lcy11g1159 955 Gene3D Phosphorylase Kinase; domain 1 653 745 - -
Lcy11g1159 955 FunFam Inactive leucine-rich repeat receptor-like protein kinase 216 314 - -
Lcy11g1159 955 SMART LRR_typ_2 223 246 IPR003591 -
Lcy11g1159 955 SMART LRR_typ_2 147 171 IPR003591 -
Lcy11g1159 955 SMART LRR_typ_2 247 271 IPR003591 -
Lcy11g1159 955 SMART LRR_typ_2 295 319 IPR003591 -
Lcy11g1159 955 SMART LRR_typ_2 99 123 IPR003591 -
Lcy11g1159 955 FunFam Leucine-rich repeat receptor-like protein kinase 32 191 - -
Lcy11g1159 955 Gene3D Transferase(Phosphotransferase) domain 1 746 951 - -
Lcy11g1159 955 ProSiteProfiles Protein kinase domain profile. 666 944 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g1159 955 Gene3D Ribonuclease Inhibitor 198 272 IPR032675 -
Lcy11g1159 955 Gene3D Ribonuclease Inhibitor 273 550 IPR032675 -
Lcy11g1159 955 SUPERFAMILY Protein kinase-like (PK-like) 669 949 IPR011009 -
Lcy11g1159 955 ProSitePatterns Protein kinases ATP-binding region signature. 672 698 IPR017441 GO:0005524(InterPro)
Lcy11g1159 955 Gene3D Ribonuclease Inhibitor 33 197 IPR032675 -
Lcy11g1159 955 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 315 519 - -
Lcy11g1159 955 CDD STKc_IRAK 672 942 - -
Lcy11g1159 955 Pfam Leucine rich repeat N-terminal domain 32 72 IPR013210 -
Lcy11g1159 955 Pfam Protein kinase domain 668 939 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g1159 955 SUPERFAMILY L domain-like 50 379 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1159 Lcy-Chr11:33979585 Lcy5g0033 Lcy-Chr5:497499 3.81E-103 dispersed
Lcy1g2551 Lcy-Chr1:46483928 Lcy11g1159 Lcy-Chr11:33979585 4.09E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65450 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1159 - - - 0.0