Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1190 ATGTCGCGTCTCTACAAGAGACGCGACTCAACTGACCATCTCGTTGCCGTCTCGTTGTCGTCCGGTTCCGTCTCGTTGAACCGGTTGCCGTCTGGTTATCAGCTGGTCGGCTTGGTCGCGTCTCTTGTAGAGATGCGACCCAACTTTGGATCTTCTTCCTCTGATTTTCTGCAATTCTTTCCAGAAAATAAACTTAGAGAGATGGCTGAATTCCTATGGACTTTTGCTGTGCAAGAAGTTTTGAAGAAGGTACTGAAACTTGCAGCTGAGCAGATTGGTGTGGCATGGGGTTTGGAGAAGGAGCTGTCCAAATTGAGGGAGGAGTTACTCCACGCTGAAGCTATTTTAAGAGATATTAACAGAAAAAGATTACACCATCAATCTGTGAGTATGTGGGTCGACAATCTTCAAGATATTGTTTACGAAGCGGATGATTTGTTGGATGAGCTTGTTTATGAAGATCTTCGACAAAAAGTGGAAATAGAAAAAACAAAACAGAAGGTGCGTAATTTCTTTTCTCCATCCAATAATCCTTTTCTGTTTCGTTGGAAGATGGCCAAAAAAATGAAGGACATTACTGAAACTTTGGATCGACATTACCTTAAGGCAAGTTCTTTAGGAGTGGTTGGTCTAGTTGGGGAGGAATCCACAGAAACAAATAAAAATATTGATCTTAAGCAGTTTCGAGAGACAACATCGATTCTTAATTTTGAAGTTATAGGAAGGGAAGTTGAAGCTTCAAACATATTGAAGCTGGTGATTGACTCTAGCAATAAACATCTTATGTCGATCATACCCATTGTGGGTATGGGTGGGATTGGGAAAACCACTTTAGCAAAGGTCATCTTCAATCATGAGTTGGTCAAAGGACATTTTGATAACACTTTATGGGTCTGTGTGTCTGAACCATTTATTATTACAAATATTTTGGAAGGGATCTTTCAGAGTCTCACAAATACTTCTGGTGGCTGGAAATCTAAGGAGAACTTAGTTCGAGGCCTCAAAAAGGAGATGCAAGGTAAGAACTATTTTCTTGTTCTTGATGATGTTTGGAATGAAGAAGCTACTTTGTGGGGTGAGTTAAAGGATTGTTTAAAAGAGACTGCTGGAAAATCTGGAAATGTTATTATTGTGACTACAAGGAGTGGAAAAGTTGCAACTATCATGGAGACAACTTCGAGTCATCATCTAAACAAATTGTCTGATGATCAATGTTGGTCCTTGTTTAAAGATAGTGCAAATGCAAATGGACTATTAATGAATCAAGAGTTGGAGACTGTTAGAGTAGAGTTGGTTAAAAAAATTGATGGAGTACCGCTAGTTGCAAAAGTTCTAGGAGGGGCAGTAACTTTTGAAGGGAACTTCGAAAGATGGGTGACAGAAGTCAAAAGAGTAGTAAAAAATATATCAAAGGACGACAAAGATTTTGTTTTATCCATACTAAAGTTAAGTGTGGATCGTCTACCGCTCCTTTCGTTAAAGCAATGTTTTGCTTATTGTTCAAATTTTCCCAAAGATCATTTATTTAACAAAGAAAGCTTAATTCGAATGTGGATAGCACAAGGATTTGTTCAATCACAAAAAGGAGAAAATGAAATGATGATGGAGGATATAGGAGAAGGATACTTCAATCTCTTACTCTCTCGCTCCTTATTTCAGGATGTCTTCATGGATAAGTATGGGAGAATTGCTTACTTTAAGATGCACGATCTAATACATGATGTTTCTTGTATTATTTCAAATCATCAAAAATTGGAACTAGATCTTCCTAACTGGAGTGAAAAAGGTGCAAGAAATTTTCGAACGTTAGTTAACGATAATTACAAGGTGCTTCACACGCATAAGTTGGACTTTCTTTGCCTACGAGTTTTAGTATTGAATCCATTTGATAAGATCGAGTTACTAAACTCAATTGGTATGTTGAAGCATTTGAGATATCTTGAGATTATAAATTATGTTGGCAGGCTTCCAGAATCTATTACCATGCTATATAATTTGCAAACATTAAATCTTGGAACACGTGTGGATCTTCCAAAGAATTTGAGGAAATTGGTTAGGCTAAGACATCTAAAATTTTTTCGCTTTCGCGTGCAACAAATGCCTTCACACATGAGCCAGTTGATTCATCTTCAAACGTTAGATGCATTTGTAGTAGGATTTGATGAAGGTTGTACAATTGAGGAACTTGGACCCTTAAAAAACCTCAAAGGATCATTGACACTTTCAAATCTTGAGCGAGTGAAAAGTAAAGCGGAAGCTATAAATGCAAAGTTGATGGAAAAGCAGGACTTACGTAGACTAGATTTCATATGGAGGAATGTTAATTACGAAGAAGAAGATAACAATCACAATGATTTAGAAGTGTTGGAAGGACTTCAACCACACAAAAATCTTCAATCATTGTCTATTATTGGCTTTGGAGGCCAAGTTTTGCCCAGTAATATTTTTGTTGAAAATTTAGTTGCGATACTTCTGCACAAGTGTACCGACTGTGAAAAGCTTCCAATGCTAGGGCAATTACCCAACTTGGAGAACCTTTACATTTCTGGTATGGGCAGTGTGAGAAGTATAGGAAGTGAGTTTTATGGAAACAACTCCAACCAGAGAGTTTATTTTCCCAACTTAAAGACACTTAGCTTCAATTCAATGCGGAACCTACAACTGTGGGAAAAGGTGACAAACGGTACTGCTTTTCCTCGTCTTGAAGGCTTAGGTATAAACCACTGTTCCAAATTAATGAGAATTCCAGATCAATTTGAATCTCTTCAAGTTCTAAGGATTTTTGAATGTGAAGGATTTATAGTCAACGAACCACCAAATGTACATTGCAAATATTTACAAATTTACAATTGTCCCAACTTGACCCTTAATGGGCATAATATGCATAACTTCAAAGAACTGAAAATTGTGGGGGATATTCAACATTTCGACGTTGATCCTGATCTCATACAACAATCTTCAGTTATAAATCTTTGCTTGGTTGGTGGTTTGGTAACTACAACTCAGCTCCCTCAACTACTTCAGCATTTCATTGCTCTGAAATCTTTAACTATAAACGATTTTCGTTCTCTTGAAGTTCTACCAGAGTGGTTGGGAAACCTTACATCTTTAGAATCATTGGAACTTTTGTATTGCTTTCGTTTGAAACAATTGCCTTCAAAAGAAGCCATGCTACGCCTCACCAAATTGAATCATCTATATGTTCGTCGATGTCGGCAGTTACAACTTGGTCGAGACCATCCAGAGGGGGCTAAACTTTCCCATTTTCTCATAAGTAATGAAAATGTACGTTTTTAG 3297 37.52 MSRLYKRRDSTDHLVAVSLSSGSVSLNRLPSGYQLVGLVASLVEMRPNFGSSSSDFLQFFPENKLREMAEFLWTFAVQEVLKKVLKLAAEQIGVAWGLEKELSKLREELLHAEAILRDINRKRLHHQSVSMWVDNLQDIVYEADDLLDELVYEDLRQKVEIEKTKQKVRNFFSPSNNPFLFRWKMAKKMKDITETLDRHYLKASSLGVVGLVGEESTETNKNIDLKQFRETTSILNFEVIGREVEASNILKLVIDSSNKHLMSIIPIVGMGGIGKTTLAKVIFNHELVKGHFDNTLWVCVSEPFIITNILEGIFQSLTNTSGGWKSKENLVRGLKKEMQGKNYFLVLDDVWNEEATLWGELKDCLKETAGKSGNVIIVTTRSGKVATIMETTSSHHLNKLSDDQCWSLFKDSANANGLLMNQELETVRVELVKKIDGVPLVAKVLGGAVTFEGNFERWVTEVKRVVKNISKDDKDFVLSILKLSVDRLPLLSLKQCFAYCSNFPKDHLFNKESLIRMWIAQGFVQSQKGENEMMMEDIGEGYFNLLLSRSLFQDVFMDKYGRIAYFKMHDLIHDVSCIISNHQKLELDLPNWSEKGARNFRTLVNDNYKVLHTHKLDFLCLRVLVLNPFDKIELLNSIGMLKHLRYLEIINYVGRLPESITMLYNLQTLNLGTRVDLPKNLRKLVRLRHLKFFRFRVQQMPSHMSQLIHLQTLDAFVVGFDEGCTIEELGPLKNLKGSLTLSNLERVKSKAEAINAKLMEKQDLRRLDFIWRNVNYEEEDNNHNDLEVLEGLQPHKNLQSLSIIGFGGQVLPSNIFVENLVAILLHKCTDCEKLPMLGQLPNLENLYISGMGSVRSIGSEFYGNNSNQRVYFPNLKTLSFNSMRNLQLWEKVTNGTAFPRLEGLGINHCSKLMRIPDQFESLQVLRIFECEGFIVNEPPNVHCKYLQIYNCPNLTLNGHNMHNFKELKIVGDIQHFDVDPDLIQQSSVINLCLVGGLVTTTQLPQLLQHFIALKSLTINDFRSLEVLPEWLGNLTSLESLELLYCFRLKQLPSKEAMLRLTKLNHLYVRRCRQLQLGRDHPEGAKLSHFLISNENVRF 1098
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 34322227 34325840 + Maker00005273 Lcy11g1190 647091

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1190 1098 Coils Coil 102 122 - -
Lcy11g1190 1098 FunFam Probable disease resistance protein At1g63360 485 578 - -
Lcy11g1190 1098 Gene3D - 221 395 IPR027417 -
Lcy11g1190 1098 SUPERFAMILY L domain-like 567 955 - -
Lcy11g1190 1098 PANTHER DISEASE RESISTANCE PROTEIN RP 88 930 IPR044974 GO:0006952(InterPro)|GO:0098542(PANTHER)
Lcy11g1190 1098 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 232 500 IPR027417 -
Lcy11g1190 1098 Gene3D - 399 484 IPR042197 -
Lcy11g1190 1098 Pfam NB-ARC domain 262 486 IPR002182 GO:0043531(InterPro)
Lcy11g1190 1098 Gene3D Ribonuclease Inhibitor 987 1098 IPR032675 -
Lcy11g1190 1098 Coils Coil 741 764 - -
Lcy11g1190 1098 Gene3D - 485 577 IPR036388 -
Lcy11g1190 1098 PRINTS Disease resistance protein signature 264 279 - -
Lcy11g1190 1098 PRINTS Disease resistance protein signature 1032 1048 - -
Lcy11g1190 1098 PRINTS Disease resistance protein signature 435 449 - -
Lcy11g1190 1098 PRINTS Disease resistance protein signature 337 351 - -
Lcy11g1190 1098 Pfam Rx N-terminal domain 76 164 IPR041118 -
Lcy11g1190 1098 Gene3D - 75 192 - -
Lcy11g1190 1098 Gene3D Ribonuclease Inhibitor 597 977 IPR032675 -
Lcy11g1190 1098 SUPERFAMILY RNI-like 872 1074 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1190 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1175 Lcy-Chr11:34140278 Lcy11g1190 Lcy-Chr11:34322227 0 dispersed
Lcy11g1176 Lcy-Chr11:34156688 Lcy11g1190 Lcy-Chr11:34322227 6.51E-199 dispersed
Lcy11g1178 Lcy-Chr11:34176225 Lcy11g1190 Lcy-Chr11:34322227 0 dispersed
Lcy11g1180 Lcy-Chr11:34211655 Lcy11g1190 Lcy-Chr11:34322227 1.21E-140 dispersed
Lcy11g1190 Lcy-Chr11:34322227 Lcy11g1196 Lcy-Chr11:34407371 0 dispersed
Lcy11g1190 Lcy-Chr11:34322227 Lcy11g1192 Lcy-Chr11:34345570 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1249 . . . . . . . . . . . . . . Sed02g1027 . . Bhi01g02658 Tan10g1276 Cmetu07g1550 . . . Lcy11g1190 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000049 1 17 1 1 1 9 0 11 8 28 9 10 9 18 20 10 9 0 0 9 17 7 7 28 33 20 21 14 7 0 325