Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1192 ATGGCTGAATTCCTATGGACTTTTGCTGTGCAAGAAGTTTTGAAGAAGGTACTGAAACTTGCAGCTGAGCAGATTGGTGTGGCATGGGGCTTGGAGATGGAGCTGTCCAAATTGAGGGAGGAGTTACTCCACGCTGAAGCTATTTTAAGAGATATTAACAGAAAAAGATTACACCATCAATCTGTGAGTATGTGGGTCGACAATCTTCAAGATATTGTTTACGAAGCCGATGATCTGTTGGATGAGCTTGTTTATGAAGATCTTCGACACAAAGTGGAAACAGAAAAAACAAAAAAGGTGCGCAATTTCTTTTCTCCATCCAATAATCCTTTTCTGTTTTGTTGGAAGATGGCCAAAAAAATGAAGGACATTACTGAAACTTTGGACCGACATTACCTTAAGGCAAGTTCTTTAGGAGTGGTTGGTCTAGTTGGGGAGGAATCCACAGAAACAAATAAAAATATTGATCTTATGCAGTTTCGAGAGACAACATCGATTCTTAATTGTGAAGTTGTAGGAAGGGAAGTTGAAGTTTCAAACATAGTGAAGCTGGTGATTGATTCTAGCAGTAAACATCTTATGTCGATCATACCCATTGTGGGTATGGGTGGGATTGGGAAAACCACTTTAGCAAAGACGATCTTCAATCATGAGTTGGTCAAAGGACATTTTGATAAAACTATATGGGTCTGTGTTTCTGAACCATTTATTATTACAAATATTTTGGAAGGAATCTTTCAGAGCCTCACAAATACTTCCGGTGGCTTGAAATCTAAGGAAAACTTAGTTCGAGGCCTCCAAAAGGAGATGCAAGGTAAGAATTATTTTCTTGTTCTTGACGATGTTTGGAATGAAGAAGCTAGTTTGTGGGGTGAGTTAAAGGATTGTTTAAAAGGGATTGCTGGAAAATCTGGAAATGTTATTATTGTGACTACAAGGAATGGAAAAGTTGCAACTATCATGGAGACAACTTCAAGTCATCATCTAAACAAATTGTCTGACGATCAATGTTGGTCCTTGTTTAAAGAGAGTGCAAATGCAAGTGGACTAATAATGAGTCCAGAGTTGGAGGCTATTAGAGTAGAGATGGTTACAAAAATTGGTGGAGTACCATTGGTTGCAAAAGTTTTAGGAGGGGCAGTAAGGTTTGAAGGGAACCACGAAAGATGGGTGACAGAAGTCAAAAGAGTAGTAAAAAATATATTAAAGGACGACAAAGATTTTGTTTTATCCATACTAAAGTTAAGCGTGGATCGTCTACCGTTCCTTTCGTTAAAGCAATGTTTTGCTTATTGTTCAAACTTTCCCAAAGATCATTTATTTGACAAAGAAAGGTTAATTCAAATGTGGATAGCACAAGGATTTGTTCAACCACAAGAAGGAGATAATGAAATGATGATGGAGGATGTAGGAGAAGGATACTTCAATCTCTTACTCTCTCGCTCCTTGTTTCAGGATGTCTCCAAGGATATGTATGGGAGAATTACTCACTTCACGATACACGATCTAATACATGATGTTTCTTGTATTATTTCAAATCGTCAAAAATTGGAACTAGAACTTCCTAATTGGAGTGAAAAAGGTGCAAGAAAGTTTCGGACATTAGTTACCGATAATTACAACGTGATTCACTCCCTGGACAACTTTCTTTGCCTACGAGTTTTAGTAATAAATGCATTATATAATTATGAGTTACCAAAATCAATTGGTATGTTGAAGCATTTGAGATATCTTGAGATTATAGTTTGTTTTCACGAGATTCCAGAATCGATTGCAATGCTATATAATTTGCAAACGTTAAATCTGGAAAAAAATGTGGATCTTCCAAAGAATTTGAGGAAATTAGTTAGGCTAAGACATCTAAAATTTTCTCTTCGTCTTGGCATGCAACAAATGCCTTCACACATGAGCCAATTGATTCATCTTCAAACGTTAGATGCATTTGCAGTAGGATTTGATGAAGGTTGTACAATTGAGGAACTTGGACCCTTAAAAAACCTGGAGGGGTCACTGACACTTTCAAATCTTGAGCGGGTGAAGAGTAAAGCAGAAGCTATAAATGCAAAGTTGATGGAAAAGCAGAACTTACATAGACTCGAATTCATATGGAGGGAAGTTAATTACGAAGGACATAACAATAACAATGATTTAGAAGTGTTGGAAGGACTTCAACTACACAAAAATCTTCAGTCATTGTCTATTATTGGCTTTGGAGGCCAAGTTTTGGCCAATGATATTTTTGTTGAAAATTTGGTTGTGATACTTCTGGAAAAGTGTACCGACTGTGAAAAGCTTCCAATGCTAGGGCAATTACCCAACTTGGAGGAACTTAACATTTCTTCCTTGGACAGTGTGAGAAGTATAGAGAGTGAGTTTTATGGAAACAACTCCAACCAGAGAGTTTATTTTCCCAACTTAAAGAGACTTAGCTTCAATTCAATGCGGAACCTACAACTGTGGGAAAAGGTGACAAACGGTATTGCTTTTCCTCGTCTTGAAGGCTTATGTATAAACGATTGTTCCAAATTAGTGAGAATTCCAGATCAATTTGAATCTCTTCAAGTTTTAAGGATTTTGAAATCTTTTGACTCTGTAGACCACAGACCACCAAATGTAGGATATTTACAGATTAAGAAATGTCCCAAGTTGACCCTGAATGGGCATGATATGCGTAACTTCAAAGAAGTGAAAATTGTGGGGGATATTCAAGATTACGACTTTGATCCTGATTTCATACAACAATCTTCAATTACAAATCTTCGCTTGGTTGATGGTTACGGAATTATAACTCAGCTTCCTCAACAACTTGAGCATTTCATTGCCTTGAAAGCCTTAACTATAAAAGGTTTTCGTGCTATTGAAGTTCTACCAGAGTGGTTCGAAAAGCTTACATCTTTGGAATCACTGGAACTTTTGGATTGCACTAATTTGAAACAATTGCCTTCAAAAGAAGTCATGCTACACCTCACCAAATTGAATCATCTATATGTTCGTCGATGTCCGCGCTTACAACTCGGTCGAGACCATCCAGAGGGGGCTAAACTTTCCCATTTTCTCATAAGTAATGAAAATTCTAGTAAAATTTTGGATTGCAGTGTATGTGAAGCTTCTGTTTGGGAGGCCAAAGCACACTGA 3135 37.32 MAEFLWTFAVQEVLKKVLKLAAEQIGVAWGLEMELSKLREELLHAEAILRDINRKRLHHQSVSMWVDNLQDIVYEADDLLDELVYEDLRHKVETEKTKKVRNFFSPSNNPFLFCWKMAKKMKDITETLDRHYLKASSLGVVGLVGEESTETNKNIDLMQFRETTSILNCEVVGREVEVSNIVKLVIDSSSKHLMSIIPIVGMGGIGKTTLAKTIFNHELVKGHFDKTIWVCVSEPFIITNILEGIFQSLTNTSGGLKSKENLVRGLQKEMQGKNYFLVLDDVWNEEASLWGELKDCLKGIAGKSGNVIIVTTRNGKVATIMETTSSHHLNKLSDDQCWSLFKESANASGLIMSPELEAIRVEMVTKIGGVPLVAKVLGGAVRFEGNHERWVTEVKRVVKNILKDDKDFVLSILKLSVDRLPFLSLKQCFAYCSNFPKDHLFDKERLIQMWIAQGFVQPQEGDNEMMMEDVGEGYFNLLLSRSLFQDVSKDMYGRITHFTIHDLIHDVSCIISNRQKLELELPNWSEKGARKFRTLVTDNYNVIHSLDNFLCLRVLVINALYNYELPKSIGMLKHLRYLEIIVCFHEIPESIAMLYNLQTLNLEKNVDLPKNLRKLVRLRHLKFSLRLGMQQMPSHMSQLIHLQTLDAFAVGFDEGCTIEELGPLKNLEGSLTLSNLERVKSKAEAINAKLMEKQNLHRLEFIWREVNYEGHNNNNDLEVLEGLQLHKNLQSLSIIGFGGQVLANDIFVENLVVILLEKCTDCEKLPMLGQLPNLEELNISSLDSVRSIESEFYGNNSNQRVYFPNLKRLSFNSMRNLQLWEKVTNGIAFPRLEGLCINDCSKLVRIPDQFESLQVLRILKSFDSVDHRPPNVGYLQIKKCPKLTLNGHDMRNFKEVKIVGDIQDYDFDPDFIQQSSITNLRLVDGYGIITQLPQQLEHFIALKALTIKGFRAIEVLPEWFEKLTSLESLELLDCTNLKQLPSKEVMLHLTKLNHLYVRRCPRLQLGRDHPEGAKLSHFLISNENSSKILDCSVCEASVWEAKAH 1044
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 34345570 34349643 + Maker00005247 Lcy11g1192 647093

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1192 1044 Gene3D - 8 125 - -
Lcy11g1192 1044 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 432 IPR027417 -
Lcy11g1192 1044 Coils Coil 35 55 - -
Lcy11g1192 1044 Pfam NB-ARC domain 192 418 IPR002182 GO:0043531(InterPro)
Lcy11g1192 1044 PANTHER DISEASE RESISTANCE PROTEIN RP 23 858 IPR044974 GO:0006952(InterPro)|GO:0098542(PANTHER)
Lcy11g1192 1044 PRINTS Disease resistance protein signature 961 977 - -
Lcy11g1192 1044 PRINTS Disease resistance protein signature 196 211 - -
Lcy11g1192 1044 PRINTS Disease resistance protein signature 367 381 - -
Lcy11g1192 1044 PRINTS Disease resistance protein signature 269 283 - -
Lcy11g1192 1044 SUPERFAMILY L domain-like 804 1003 - -
Lcy11g1192 1044 Gene3D - 155 327 IPR027417 -
Lcy11g1192 1044 Gene3D Ribonuclease Inhibitor 529 901 IPR032675 -
Lcy11g1192 1044 Coils Coil 673 696 - -
Lcy11g1192 1044 Gene3D - 331 416 IPR042197 -
Lcy11g1192 1044 Gene3D Ribonuclease Inhibitor 902 1037 IPR032675 -
Lcy11g1192 1044 Pfam Rx N-terminal domain 9 99 IPR041118 -
Lcy11g1192 1044 Gene3D - 417 509 IPR036388 -
Lcy11g1192 1044 SUPERFAMILY L domain-like 534 861 - -
Lcy11g1192 1044 FunFam Probable disease resistance protein At1g63360 418 510 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1192 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1186 Lcy-Chr11:34272263 Lcy11g1192 Lcy-Chr11:34345570 0 dispersed
Lcy11g1192 Lcy-Chr11:34345570 Lcy11g1196 Lcy-Chr11:34407371 0 dispersed
Lcy11g1190 Lcy-Chr11:34322227 Lcy11g1192 Lcy-Chr11:34345570 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1264 . . . . . . . . . . . . . . . . . Bhi01g02657 . . . Hepe05g1252 . Lcy11g1192 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000049 1 17 1 1 1 9 0 11 8 28 9 10 9 18 20 10 9 0 0 9 17 7 7 28 33 20 21 14 7 0 325