Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1205 ATGTTTCTCATGGTTTACAAAGTTCATCAATTTTTGAAGATAAGGAGACGCAAATTTAACAAGGAGAAGTTCTTCAACCAAAATGGTGGAACCTTATTAGAGAGAAAACTTCAAGGAATGGAGAAAAAGGTAAAGATATTCACAAAGGGAGAATTAAAAAGAGCGACAGATAACTACAACCACAATCGACTTCTTGGTCGAGGAGGATATGGTACAGTTTACAAAGGAAATCTTCGAGATGGCACCATTGTTGCAATAAAAAGATCGAATCAAATCGATAGGAAATGGATCGAGCAGTTCATTAATGAAGTCATTGCCCTTTCTCAAATCAACCATCGAAATGTTGTCAAGCTTTTAGGTTGTTGTTTCGAGACAAAGTTTCCTTTGCTAGTATACGAATTTGTCCCAAACAAAACACTTTCCGACCATATCTACGAACATGGTCATGAAGATCATTCTTCATCTCCTCTTTCATGGGACATTCGACTTAGAATCGCTTCCGAAGTTGCTGGAGCTATAGCTTACATGCATTCCGCCGCTTCTATACCTATTTTCCATCGAGATATCAAGTCTTCAAACATACTTTTGGATCATAACTACAATGCAAAAGTGTCTGATTTTGGGACATCGAGGTTCGTGCCTTATGATCAATCTCACTTAACTACAAAAGTGCAAGGAACGTTTGGCTATATCGATCCTGAGTATTTTCGGTCGAGTCAATTAACTGAAAAGAGCGATGTTTATAGTTTTGGAGTTTTGATGGTGGAGCTTTTAACGGGAAAACAGCCGTTCTCTTTTGCAAAAGATGAGGGTAAGAATCTATTGGAGTACTTCATTTCATTGGAAAAGGACAATCAACTTATTGAAATTCTTGATGGTGTAGTAGTGAGAGAGGCAAAGATAGAGGATGTTAATTATGTTGCAAAACTAGCCATTAGATGTTTGAGACTGAATGGGAAAAGAAGGCCTACTATGAAACAAGTATTTTTGGAACTAGAAGGATTGAGGAAGTCCCAAGATTGTCTAGAATTTGTTGAAGAAAATCAATCAAGTGGGAGTTTTACTATTCCCATTAATGCAAGTAGTAGCTATGAAGAGCTTACAGATGACAGTATTGTATCTCTAGAAATAGAAACACTGTAA 1143 37.01 MFLMVYKVHQFLKIRRRKFNKEKFFNQNGGTLLERKLQGMEKKVKIFTKGELKRATDNYNHNRLLGRGGYGTVYKGNLRDGTIVAIKRSNQIDRKWIEQFINEVIALSQINHRNVVKLLGCCFETKFPLLVYEFVPNKTLSDHIYEHGHEDHSSSPLSWDIRLRIASEVAGAIAYMHSAASIPIFHRDIKSSNILLDHNYNAKVSDFGTSRFVPYDQSHLTTKVQGTFGYIDPEYFRSSQLTEKSDVYSFGVLMVELLTGKQPFSFAKDEGKNLLEYFISLEKDNQLIEILDGVVVREAKIEDVNYVAKLAIRCLRLNGKRRPTMKQVFLELEGLRKSQDCLEFVEENQSSGSFTIPINASSSYEELTDDSIVSLEIETL 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 34512863 34514005 - Maker00005163 Lcy11g1205 647106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1205 380 Gene3D Transferase(Phosphotransferase) domain 1 135 355 - -
Lcy11g1205 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy11g1205 380 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 5 339 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Lcy11g1205 380 Pfam Protein kinase domain 59 328 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g1205 380 Gene3D Phosphorylase Kinase; domain 1 38 134 - -
Lcy11g1205 380 FunFam Wall-associated receptor kinase 2 32 134 - -
Lcy11g1205 380 FunFam Wall-associated receptor kinase 2 135 353 - -
Lcy11g1205 380 ProSiteProfiles Protein kinase domain profile. 59 345 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g1205 380 ProSitePatterns Protein kinases ATP-binding region signature. 65 87 IPR017441 GO:0005524(InterPro)
Lcy11g1205 380 CDD STKc_IRAK 65 335 - -
Lcy11g1205 380 SUPERFAMILY Protein kinase-like (PK-like) 42 339 IPR011009 -
Lcy11g1205 380 PIRSF ILK 17 341 - -
Lcy11g1205 380 SMART serkin_6 59 335 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1205 Lcy-Chr11:34512863 Lcy2g1534 Lcy-Chr2:20265714 9.07E-153 dispersed
Lcy11g1205 Lcy-Chr11:34512863 Lcy2g1538 Lcy-Chr2:20416519 6.38E-160 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65452 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1205 - - - 0.0