Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1247 ATGAAATCTTCACTTCCTCCCATTTTCAAATTCCCCGCCATTCTTACTCCCAGATTCTTCTCCGCCACCATGTCCACCACTTCCGATCACTCTCCCCCCGCCTTCGACCGACCTCGCTCCGTCATCAAGAAGATTCTCGCTAAACTCCAGCACGAAGGCGACGGCGCCGTCGTTCGTCGCGGCATCGGAAGGAGCGATTTGAAGAATCTCGATCCATTTCTCATGCTCGATGATTTCTCTGTCAGTCCGCCGGCTGGATTCCCCGATCATCCTCACAGAGGTTTTGAGACAGTGACGTACATGTTACAAGTAAAATCTCTAGGAGGAATTACCCATCAAGATTTTGCTGGCCACAAGGGTACAATCAGAACAGGGGATGTCCAGTGGATGACAGCAGGAAGAGGAATTATCCATTCCGAAATGCCTGCTGGTGAAGGATCTCAAAAGGGTTTGCAGCTTTGGATCAATCTTGCATCTCATGACAAAATGATGGAACCAAGGTATCAGGAGATCCCAAGCGACAACATTCCGAGAGCGGAGAAAGACGGTGTAGAAGTTCGTGTCATAGCAGGAGAGTCCATGGGAGTCCATTCCCCAATCTACACTCGAACTCCAACCATGTACCTCGACTTCACATTGAAACCAAGGGCTCAAGTGCACCAAAGCATTCCAGACACGTGGACCTCTTTCGTGTACATAATCGACGGGGAAGGGGTGTTCGGGTCCTCGAACTCGTCCCGAGTGGCAGCTCACCATGTTCTAGTATTAGGACCGGGAGATGGATTGAGTGTGTGGAATAGATCTTCGAAGGCATTGAGGTTTGTTTTGATAGCAGGGAAGCCACTGAATGAGCCCATTGTTCAATATGGACCATTTGTGATGAACTCACAATCTGAAATTGACCAAGCCATTGAGGACTACCACTATGGCAAAAATGGATTTGAAATGGCAAAGTATTGGAGATCTCAGTGA 972 48.66 MKSSLPPIFKFPAILTPRFFSATMSTTSDHSPPAFDRPRSVIKKILAKLQHEGDGAVVRRGIGRSDLKNLDPFLMLDDFSVSPPAGFPDHPHRGFETVTYMLQVKSLGGITHQDFAGHKGTIRTGDVQWMTAGRGIIHSEMPAGEGSQKGLQLWINLASHDKMMEPRYQEIPSDNIPRAEKDGVEVRVIAGESMGVHSPIYTRTPTMYLDFTLKPRAQVHQSIPDTWTSFVYIIDGEGVFGSSNSSRVAAHHVLVLGPGDGLSVWNRSSKALRFVLIAGKPLNEPIVQYGPFVMNSQSEIDQAIEDYHYGKNGFEMAKYWRSQ 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 35451720 35454118 + Maker00005226 Lcy11g1247 647148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1247 323 CDD cupin_pirin_C 205 281 - -
Lcy11g1247 323 Gene3D Jelly Rolls 52 308 IPR014710 -
Lcy11g1247 323 FunFam pirin 52 188 - -
Lcy11g1247 323 PIRSF Pirin 37 321 IPR012093 -
Lcy11g1247 323 PANTHER PIRIN-RELATED 28 323 IPR012093 -
Lcy11g1247 323 SUPERFAMILY RmlC-like cupins 39 321 IPR011051 -
Lcy11g1247 323 Gene3D Jelly Rolls 177 282 IPR014710 -
Lcy11g1247 323 Pfam Pirin C-terminal cupin domain 208 313 IPR008778 -
Lcy11g1247 323 Pfam Pirin 58 155 IPR003829 -
Lcy11g1247 323 CDD cupin_pirin_N 56 157 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1247 Lcy-Chr11:35451720 Lcy6g1672 Lcy-Chr6:31459536 2.96E-139 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1247 K06911 - csv:101205861 598.971