Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1256 ATGGAGGTCGACGATCGCTTTGTGGACCTCAATCCCCGGACCTGCGTCGTCTTGGGAGGCCGTGGATTTCTCGGCCGATCTCTCGTTCTCCGCCTCTTGAAACTCCCCAAGTGGATCGTTCGAATTGCTGATTCTCCTGAGTCGCTTGAACTCGATCCCTCCGAGCACGATTCTCTCCTCTCCGACGCGCTTTTGGCCGGCCGGGCTTCCTATTTCCATGTCGATGTTCGAGATAAGGATCAGATCGTTGCAGGTGTTTCTTTCTCTCTCTCTCTTGATTCTCTCTGTTTTGTTGCGTTTGGTGTTGAGTGGATGGATTTGATTGAAGTGGTTTTGAATTTTTTGAAATGCGAACGTTCTGAGACTTTTTCTGTACAGAAAGCTATTAACCCCTTGAAAGAATCCTTGTTATTCTGTCCCACTTCAAAGGAATTTGTAACTGCTGGCATCTTGATTTGTCATTTAGGTGCCAAAAATGTCATTAATGCTTGTCGAGAATGCAAAGTAAGACGGCTAATATTCAACAGTTCAGCTGATGTTATTTTTGATGGTTCATGTGATATACATAATGGAGATGAATCATTAAAATACCCATGGAAATTTGAGGACATGTTGAGTGACCTAAAGGCTCAAGCTGAAGCACTCATCCTATTTGCCAACGACATAGATGGACTTCTAACATGTGCACTTCGCCCAAGCAATGTTTTTGGGCCGGACGACACACGACTTGTTCCTTTTGTAGTGCATCAGGCAAAATTCAGTTTAGCAAAGTTCATTATAGGGAATGGTGAAAACATGTCTGACTTCACATTTGTTGAGAATGTGACCCATGCCCATATCTGTGCAGAAGAAGCACTAGATTTTCGAATGGTGTCTGTAGCTGGAAAGGCTTTTTTCATCACTAATTTTAAACCCATGAAGTTTTGGGAATTTATATCTCTCATATTGGAAGGCTTGGGTTACCGAAGGCCATCAGTAAAAATCCCCTTTAAGATGGTTTGGAATGTTCTCTTGTTTATGAAATGGATGCATGAACAGTTTGGATTCAATAAATATAATCACTCCACTTGGGCTCATTACATTCAGCTAGCCTCGTGCTCTAGAACTTTTAACTGTGATGCCACACATAAACAACTTGGGTACTCTCCTATTGTCTCCTTGGAAGAAGGCATAGCACGAACCATTGTATCATTTTCACATTTGCGTAAAGAATTGTCTCTTGCAAGTTTCACTGAATTTACTGAAGAATCAAAAGCTGATAAGCTGCTGGGTGGTGGAAGAGTTGCTGATATATTGTTATGGCGAGAAGAGAGGAAATCATTCACGTGTTTTCTTGCTTCGTCTCTATTGTTTTATTGGTTTTTTATACGTGGAGGAACGTTTATATCATCAGCAGCTCAACTTCTGTTGTCTATCATTGTCGTCCTTTATGGATATGGCTTCATGCCATCAGACATATATGGGTTTCCCATTCAGAAATTATCTGCGACTATGTTTCGACAATCTGATTCAGTAGTCAGAGATTCAATAATGACCCTAGCATGCTTGTGGAATAGAGGTGTACATAACGCAAGATCATTGGCCCGGGGAGAGGATTGGAATTATTTTTTTAAGACTGTAGGATCTCTTTATCTCCTCAAGCTGTTTCTCTCACGATCCTTGACTACATTGATAGGCATGGGACTGGTGTTTGGATTCACTGCATTCTTTGTGTATGAGCAATATGAAATCGAGATCGATGGATTTGCAAAGTTCCTTTTCATCAGCATCATGGAATTAAAAAGACAAGTTGCAAGTCATTTACCAACACCATTGATGTCATTTCTCTGTTGTGACAAAGTATCACATCAAGCTAAAGAAGTTGCAACAAAGCGTTAG 1878 41.11 MEVDDRFVDLNPRTCVVLGGRGFLGRSLVLRLLKLPKWIVRIADSPESLELDPSEHDSLLSDALLAGRASYFHVDVRDKDQIVAGVSFSLSLDSLCFVAFGVEWMDLIEVVLNFLKCERSETFSVQKAINPLKESLLFCPTSKEFVTAGILICHLGAKNVINACRECKVRRLIFNSSADVIFDGSCDIHNGDESLKYPWKFEDMLSDLKAQAEALILFANDIDGLLTCALRPSNVFGPDDTRLVPFVVHQAKFSLAKFIIGNGENMSDFTFVENVTHAHICAEEALDFRMVSVAGKAFFITNFKPMKFWEFISLILEGLGYRRPSVKIPFKMVWNVLLFMKWMHEQFGFNKYNHSTWAHYIQLASCSRTFNCDATHKQLGYSPIVSLEEGIARTIVSFSHLRKELSLASFTEFTEESKADKLLGGGRVADILLWREERKSFTCFLASSLLFYWFFIRGGTFISSAAQLLLSIIVVLYGYGFMPSDIYGFPIQKLSATMFRQSDSVVRDSIMTLACLWNRGVHNARSLARGEDWNYFFKTVGSLYLLKLFLSRSLTTLIGMGLVFGFTAFFVYEQYEIEIDGFAKFLFISIMELKRQVASHLPTPLMSFLCCDKVSHQAKEVATKR 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 35749180 35758523 + Maker00005282 Lcy11g1256 647157

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1256 625 Gene3D - 7 106 - -
Lcy11g1256 625 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 156 328 IPR002225 GO:0006694(InterPro)|GO:0016616(InterPro)
Lcy11g1256 625 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 16 84 IPR002225 GO:0006694(InterPro)|GO:0016616(InterPro)
Lcy11g1256 625 ProSiteProfiles Reticulon domain profile. 428 625 IPR003388 -
Lcy11g1256 625 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 13 397 IPR036291 -
Lcy11g1256 625 PANTHER RETICULON 412 596 - -
Lcy11g1256 625 Pfam Reticulon 428 584 IPR003388 -
Lcy11g1256 625 Gene3D - 150 402 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1256 K23558 - - csv:101212494 925.235
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1256 Lcy-Chr11:35749180 Lcy13g2234 Lcy-Chr13:41213266 5.77E-112 dispersed
Lcy11g1256 Lcy-Chr11:35749180 Lcy12g0793 Lcy-Chr12:10330890 1.49E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1274 . . . . . . . . . . . . Car06g01373 . Sed12g0690 . . Bhi01g01193 Tan10g1204 Cmetu06g2044 . Hepe05g1297 . Lcy11g1256 . . . . . . . . . . Cone11ag0658 . . . . . Blo07g00114 . . . . . Bma06g01439 . Cmo06g01612 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011479 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 1 31