Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1258 ATGGAGAAGGACAAACCCCAAACCCATTCTGGTGGGTTTCTGCCCCCATCGAGTCGTTACTCGAGTCTTTCACCAACTGCGAGCAGTTTCAATGGAAAATCTGAGGCAGCTTCGTGTTCAATGTCGCTTCCTCCAATGGCTCCGAGTGCTAATTCCGATTCGGGTCAATTCGGTCGTGGAATTTCCAGCGATTCCAATCGGTTCAGCCATGATGTTAGTCGGATGCCTGATAACCCGCCGAGAAATATTGGTCATAGACGCGCCCATTCAGAAATACTGACCCTGCCTGATGATATTTGTTTTGACAGCGACCTTGGTGTCATTGGCAGTGCTGATGGGCCTTCTTTTTCTGATGATACTGAGGAGGATTTGTTGTCCATGTACCTTGACATGGATAAATTCAATTCTTCGACTGCAACCTCTGCAGTACAAGTCGGCGAGTCATCTTCTGCTGTTGTAGAAGCGAGATCGACTCCTACTTCAGCATTTGGAGCTGTAACATCTAAGGATGATGCTGCTGTTGGTTTGAAGGAGAGGCCGAGAGTTAGGCACCAGCACAGCCAGTCCATGGATGGCTTGACAACTATCAAGCCTGAGATGCTTGTCTCAGGGTCTGAAGAAGTCTCTGCAGCTGATTCCAAGAAAGCCATGTCAGCTACAAAGCTTGCTGAGCTTGCTCTGATTGACCCCAAACGTGCAAAGAGGATATGGGCAAATAGACAGTCAGCTGCTAGGTCAAAGGAAAGAAAGATGCGGTACATTGCTGAGCTTGAACGAAAAGTTCAGACTTTGCAAACAGAGGCAACTTCATTATCTGCTCAGTTGACCCTCTTACAGGTGGCTTTTCACTTTGGACGCCTATTCTATATTTTGATGATCATTTGGATTCCAACGTTTCTAAAGTTATATAAAGATATCATGTTTTACTCATTGCCTTCTTATTATCAGAGAGATACAAATGGTCTTACTGCTGAGAACAGTGAACTAAAGCTGAGGTTGCAGACAATGGAGCAGCAGGTTCACCTGCAAGATGGTAAGGACCTCTTCTGA 1050 45.9 MEKDKPQTHSGGFLPPSSRYSSLSPTASSFNGKSEAASCSMSLPPMAPSANSDSGQFGRGISSDSNRFSHDVSRMPDNPPRNIGHRRAHSEILTLPDDICFDSDLGVIGSADGPSFSDDTEEDLLSMYLDMDKFNSSTATSAVQVGESSSAVVEARSTPTSAFGAVTSKDDAAVGLKERPRVRHQHSQSMDGLTTIKPEMLVSGSEEVSAADSKKAMSATKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQVAFHFGRLFYILMIIWIPTFLKLYKDIMFYSLPSYYQRDTNGLTAENSELKLRLQTMEQQVHLQDGKDLF 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 35776007 35778371 + Maker00005180 Lcy11g1258 647159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1258 349 CDD bZIP_plant_RF2 232 279 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g1258 349 SMART brlzneu 227 293 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g1258 349 MobiDBLite consensus disorder prediction 11 69 - -
Lcy11g1258 349 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 229 279 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g1258 349 Gene3D - 230 282 - -
Lcy11g1258 349 Pfam bZIP transcription factor 231 278 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g1258 349 FunFam probable transcription factor PosF21 230 282 - -
Lcy11g1258 349 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 69 345 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lcy11g1258 349 SUPERFAMILY Leucine zipper domain 231 279 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g1258 349 Coils Coil 247 274 - -
Lcy11g1258 349 MobiDBLite consensus disorder prediction 1 83 - -
Lcy11g1258 349 Coils Coil 319 339 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1258 Lcy-Chr11:35776007 Lcy8g2135 Lcy-Chr8:47538732 1.03E-41 dispersed
Lcy11g1258 Lcy-Chr11:35776007 Lcy11g1261 Lcy-Chr11:35823558 2.64E-190 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19116 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1258 - - - 0.0