Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1259 ATGCCTCAATTTCGTTCAATATTCTCCAAATTCAAGTCTTCTAAGAAATTCCTTTCTACTTCTACATCATCTTCTTCCATTTATCACCTACGCGCCAATGCTTCAGGCTCTCGACCTCAGTTCTCTTCTGTGATATCAGAATTCACTAAAAAACAATCCAATGAGGCAAATTCCTCAAATTTTGCATCTGGGTATTTATCACATTGTCGTCGGCATCGATATTCCACCTTTTCCGGATGCCACAGTCAATTTAACCCCGTTTTTACAACTGGGAATTGGCTGAAATGCTCGAATTTAAGAGGTTACAGAAGAAGCACAAGGAGATTCAGTAGTGAGGCGGAACGAGAGTCTATAGAATATGATGTTGTTATCATTGGAGCAGGACCTGCAGGGCTATCTGCGGCGATTCGGTTGAAGCAGATGTGCCGAGAAAAGGATGTTGATTTATCGGTTTGTGTGGTGGAGAAAGGCGCTGAAGTTGGCGCTCACATCCTCTCTGGAAATGTTTTTGAACCCCGAGCATTGGATGAGTTAATCCCCACATGGAAGGAGGACGAGGCACCAATCAGTGTCCCTGTAACTTCTGATAAGTTTTGGTTTCTAACAAAAAACCGTGCCTTTTCACTTCCTAGCCCCTTTAATAATGAAGGAAACTATGTGATAAGTTTAAGTCAGTTAGTTCGTTGGATGGGAATGAAAGCTGAAGAGTTGGGAGTAGAAATATATCCAGGGTTTGCTGCTAGTGAGGTATTATATGATACAACAGATACAGTTGTTGGCATTAGAACTAATGATATGGGCGTAGCAAAAGATGGCTCAAAGAAGGATAATTTTCAACTTGGTGTAGAATTGAGAGGGCGCATAACGCTTCTAGCTGAGGGATGTCGAGGGTCATTAGCAGAGGTGTGGGAAATAGACGAGGACAAACATAATCCAGGAGCTGTGCTTCATACTTTGGGTTGGCCCTTGAATCAGAAGACGTATGGGGGCTCATTTCTCTACCACATGAAGGATAGGCAGATTTCTATTGGCCTCGTAGTTGCTTTAAATTATCAGAATCCTTTCTTGAATCCTTATGAAGAATTTCAGAAATTAAAACATCATCCCGTCATCAAAGAACTTCTAGAAGGTGGGACAGTTGTCCAATATGGGGCTCGCACTTTAAATGAAGGCGGTCTTCAGTCTGTTCCATATCCAGTTTTTCCGGGAGGAGCAATTATTGGATGTTCAGCTGGCTTTTTAAATGTACCAAAGATTAAGGGCACACACACTGCAATGAAGTCAGGAATGCTAGCAGCTGAGGCTGCATTTGGCACACTTCATGGTGGCTTGAAAATGGATGTGTATTGGGATAATTTGCGAGGTTCATGGATATGGGAAGAACTATATCGAGCTCGGAACTATAGACCTGCATTTGAGCATGGTCTTATTCCGGGCTTGACCTTAAGTGCACTGGAGCACTATGTACTTAAAGGAAGGTCCCCTCTTACACTAAAGCATGGGAAACCAGACCATGAAGCTACAAATGCTGCAAATTTGCATACTCCAATTGATTATCCAAAGTACGACAATCTTCTGTCCTTTGATGTGCCAACCTCGCTACACAGGAGCAACACAAATCATGAACATGATCAGCCAGCCCATCTTCGCTTAAGGGACCCTAAGATTCCCGAGGAAGTAAATTTGAAAGAATATGCCGCACCTGAGTCAAGATATTGTCCTGCACGTGTATACGAGTACATACCTGATGAAAACAACCAGATGAAGTTGCAGATTAATGCTCAAAATTGTCTTCATTGCAAGTGTTTGATGTTAGAAAAGAATGTTCCATTTGTTTCTGTAGTTCAACTTGTAATGAGTGACACTTTTCTTCAGGCTTGTGACATTAAAGATCCAAAGCAAAACATCGAGTGGAGTGTCCCAGAAGGCGGTGGCGGTCCAGGTTACTCCGTCATGTAA 1959 42.47 MPQFRSIFSKFKSSKKFLSTSTSSSSIYHLRANASGSRPQFSSVISEFTKKQSNEANSSNFASGYLSHCRRHRYSTFSGCHSQFNPVFTTGNWLKCSNLRGYRRSTRRFSSEAERESIEYDVVIIGAGPAGLSAAIRLKQMCREKDVDLSVCVVEKGAEVGAHILSGNVFEPRALDELIPTWKEDEAPISVPVTSDKFWFLTKNRAFSLPSPFNNEGNYVISLSQLVRWMGMKAEELGVEIYPGFAASEVLYDTTDTVVGIRTNDMGVAKDGSKKDNFQLGVELRGRITLLAEGCRGSLAEVWEIDEDKHNPGAVLHTLGWPLNQKTYGGSFLYHMKDRQISIGLVVALNYQNPFLNPYEEFQKLKHHPVIKELLEGGTVVQYGARTLNEGGLQSVPYPVFPGGAIIGCSAGFLNVPKIKGTHTAMKSGMLAAEAAFGTLHGGLKMDVYWDNLRGSWIWEELYRARNYRPAFEHGLIPGLTLSALEHYVLKGRSPLTLKHGKPDHEATNAANLHTPIDYPKYDNLLSFDVPTSLHRSNTNHEHDQPAHLRLRDPKIPEEVNLKEYAAPESRYCPARVYEYIPDENNQMKLQINAQNCLHCKCLMLEKNVPFVSVVQLVMSDTFLQACDIKDPKQNIEWSVPEGGGGPGYSVM 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 35788775 35799782 - Maker00005289 Lcy11g1259 647160

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1259 652 Gene3D - 379 465 IPR036188 -
Lcy11g1259 652 Pfam NAD(P)-binding Rossmann-like domain 124 169 - -
Lcy11g1259 652 Gene3D - 105 311 IPR036188 -
Lcy11g1259 652 PANTHER ELECTRON TRANSFER FLAVOPROTEIN-UBIQUINONE OXIDOREDUCTASE 300 652 IPR040156 GO:0004174(PANTHER)|GO:0004174(InterPro)|GO:0022900(PANTHER)|GO:0022900(InterPro)|GO:0031305(PANTHER)
Lcy11g1259 652 SUPERFAMILY FAD-linked reductases, C-terminal domain 299 390 - -
Lcy11g1259 652 SUPERFAMILY FAD/NAD(P)-binding domain 115 524 IPR036188 -
Lcy11g1259 652 SUPERFAMILY 4Fe-4S ferredoxins 528 651 - -
Lcy11g1259 652 Pfam Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 525 602 IPR007859 GO:0051536(InterPro)
Lcy11g1259 652 Pfam Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 625 650 IPR007859 GO:0051536(InterPro)
Lcy11g1259 652 Gene3D - 622 647 - -
Lcy11g1259 652 Gene3D - 529 616 - -
Lcy11g1259 652 Pfam ETF-QO, ubiquinone-binding 299 388 IPR049398 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1259 K00311 - - csv:101211771 1107.05
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1268 Blo01g00193 . . Bda08g00158 . . . Bma05g01166 . . . Cma14g01519 . Car14g01343 Sed12g0692 . Cpe03g01278 Bhi01g01188 Tan10g1201 Cmetu06g1782 . Hepe05g1300 . Lcy11g1259 . . . . . . . . . Cone18ag0851 . . . . . . . . Bda13g00549 Bpe05g00974 . . . . . Cmo14g01554 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012450 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 29