Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1261 ATGGAGAAGGACAAACCCCAAAGCCATTCTGGTGGATTTCTACCCCCATCGAGTCGTTACTCAGGTCTCTCACCAACTGGGAGCAATTTCAATGGAAAATCTGAGGCAACGTCGTCTTCAATGTCGCTTCCTCCAATGGCTTCAAGTGCTAATTCCGATTCGAGTCAATATGGTCGTGGAATGTCTACCGATTCTAATCGGTTCAGCCATGATATTAGTCGGATGCCTGATAACCCGCCGAGAAATATTGGTCACAGACGTGCTCATTCAGAAATACTGACCCTTCCTGATGATATTTGTTTCGACAGTGACCTTGGTGTCATTGGCAGTGCTGATGGCCCTTCTCTTTCTGATGATACCGAGGAAGATTTGTTATCCATGTACCTCGACATGGACAAATTCAATTCTTCGACTGCTACCTCTGCAATACAAGTTGGTGAGTCATCTTCTGCTATGGTAGAAGCAAGATCAACTCCTACTTCAGCAATTGGTGCAGCAACTTCTAAAGACGATGCTTCCATTGGTTTGAAGGAGAGGCCAAGAGTTAGGCACCAGCATAGCCAGTCCATGGATGGCTTGACAACCATAAAGCCTGAGATGCTTGTCTCAGGATCTGAAGAAGTCTCTGCAGCTGATTCCAAGAAAGCCATGTCAGCTACAAAGCTTGCTGAGCTTGCACTAATTGACCCCAAACGTGCAAAGAGGATATGGGCAAATAGACAGTCAGCTGCTAGGTCAAAGGAAAGAAAGATGCGGTACATTGCTGAGCTTGAGCGGAAAGTTCAGACTCTGCAAACAGAGGCAACTTCTTTATCTGCTCAGTTAACCCTCTTACAGAGAGACACAAACGGTCTTACTGCTGAGAACAGTGAACTAAAGCTGCGGTTGCAGACAATGGAGCAGCAGGTTCACCTACAAGATGGTAAGGACCTCTATAATTTCATTTTTCATGTGACTGCACATTATGGTTGCCTTCTCTTAGTTTGCAGATGA 993 45.52 MEKDKPQSHSGGFLPPSSRYSGLSPTGSNFNGKSEATSSSMSLPPMASSANSDSSQYGRGMSTDSNRFSHDISRMPDNPPRNIGHRRAHSEILTLPDDICFDSDLGVIGSADGPSLSDDTEEDLLSMYLDMDKFNSSTATSAIQVGESSSAMVEARSTPTSAIGAATSKDDASIGLKERPRVRHQHSQSMDGLTTIKPEMLVSGSEEVSAADSKKAMSATKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDGKDLYNFIFHVTAHYGCLLLVCR 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 35823558 35829176 + Maker00005299 Lcy11g1261 647162

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1261 330 MobiDBLite consensus disorder prediction 11 69 - -
Lcy11g1261 330 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 69 308 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lcy11g1261 330 MobiDBLite consensus disorder prediction 1 84 - -
Lcy11g1261 330 Pfam bZIP transcription factor 231 285 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g1261 330 SMART brlzneu 227 291 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g1261 330 SUPERFAMILY Leucine zipper domain 231 282 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g1261 330 Coils Coil 247 302 - -
Lcy11g1261 330 CDD bZIP_plant_RF2 232 281 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g1261 330 FunFam probable transcription factor PosF21 230 283 - -
Lcy11g1261 330 Gene3D - 230 282 - -
Lcy11g1261 330 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 229 292 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1261 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1261 Lcy-Chr11:35823558 Lcy7g1073 Lcy-Chr7:11487583 1.01E-45 dispersed
Lcy11g1258 Lcy-Chr11:35776007 Lcy11g1261 Lcy-Chr11:35823558 2.64E-190 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy10g1638 . 6 295 bZIP Transcription Factor Family AT2G41070 50.3 4.1e-50 195.7
Lcy6g2255 . 1 342 bZIP Transcription Factor Family AT2G35530 69.3 7.6e-110 394.8
Lcy12g1977 . 1 402 bZIP Transcription Factor Family AT2G35530 54.9 2.1e-96 350.1
Lcy7g1073 . 4 346 bZIP Transcription Factor Family AT2G40620 57.6 3.1e-86 316.2
Lcy8g1689 . 58 388 bZIP Transcription Factor Family AT2G40620 51.0 3.4e-69 259.6
Lcy8g1257 . 55 287 bZIP Transcription Factor Family AT4G35040 61.3 2.0e-63 240.0
Lcy13g1614 . 108 437 bZIP Transcription Factor Family AT5G06950 79.2 2.1e-134 476.1
Lcy7g0710 . 24 356 bZIP Transcription Factor Family AT5G06950 76.6 7.4e-132 467.6
Lcy10g0967 . 134 466 bZIP Transcription Factor Family AT5G06950 70.6 1.9e-119 426.4
Lcy5g0911 . 315 757 bZIP Transcription Factor Family AT5G06950 58.2 3.6e-118 422.2
Lcy5g1196 . 183 467 bZIP Transcription Factor Family AT5G06950 57.3 8.1e-86 314.7
Lcy8g1992 . 205 485 bZIP Transcription Factor Family AT5G06950 57.0 1.8e-85 313.5
Lcy5g0638 . 216 487 bZIP Transcription Factor Family AT5G06950 58.8 2.4e-82 303.1
Lcy10g2336 . 195 483 bZIP Transcription Factor Family AT5G06950 53.9 7.6e-76 281.6
Lcy6g0977 . 77 356 bZIP Transcription Factor Family AT5G06950 54.5 7.1e-74 275.0
Lcy5g1196 . 181 466 bZIP Transcription Factor Family AT1G08320 75.2 3.0e-118 422.5
Lcy8g1992 . 203 484 bZIP Transcription Factor Family AT1G08320 73.0 2.4e-115 412.9
Lcy13g1614 . 152 436 bZIP Transcription Factor Family AT1G08320 63.2 6.4e-97 351.7
Lcy7g0710 . 68 355 bZIP Transcription Factor Family AT1G08320 60.4 3.7e-92 335.9
Lcy10g0967 . 172 465 bZIP Transcription Factor Family AT1G08320 58.2 1.3e-89 327.4
Lcy5g0638 . 216 487 bZIP Transcription Factor Family AT1G08320 58.8 6.2e-84 308.5
Lcy8g1257 . 55 316 bZIP Transcription Factor Family AT2G16770 58.6 5.9e-65 245.0
Lcy13g1614 . 128 437 bZIP Transcription Factor Family AT5G06960 79.4 4.9e-125 444.9
Lcy7g0710 . 56 356 bZIP Transcription Factor Family AT5G06960 76.7 1.8e-119 426.4
Lcy5g0911 . 336 757 bZIP Transcription Factor Family AT5G06960 56.3 7.8e-107 384.4
Lcy10g0967 . 160 466 bZIP Transcription Factor Family AT5G06960 67.8 6.6e-106 381.3
Lcy5g1196 . 178 467 bZIP Transcription Factor Family AT5G06960 56.8 5.4e-84 308.5
Lcy8g1992 . 205 485 bZIP Transcription Factor Family AT5G06960 56.0 5.4e-84 308.5
Lcy5g0638 . 216 487 bZIP Transcription Factor Family AT5G06960 59.3 4.8e-80 295.4
Lcy10g2336 . 185 483 bZIP Transcription Factor Family AT5G06960 52.4 8.7e-74 274.6
Lcy6g0977 . 52 356 bZIP Transcription Factor Family AT5G06960 51.8 6.2e-72 268.5
Lcy3g0949 . 1 600 bZIP Transcription Factor Family AT4G38900 54.3 2.0e-126 450.3
Lcy10g1347 . 93 282 bZIP Transcription Factor Family AT4G38900 54.9 4.7e-38 156.8
Lcy7g1073 . 125 239 bZIP Transcription Factor Family AT4G38900 76.5 1.5e-36 151.8
Lcy3g0949 . 2 497 bZIP Transcription Factor Family AT2G21230 51.2 1.7e-93 340.9
Lcy9g0965 . 102 283 bZIP Transcription Factor Family AT2G21230 55.7 2.4e-36 151.0
Lcy4g0522 . 1 251 bZIP Transcription Factor Family AT2G42380 56.9 7.1e-56 214.9
Lcy9g1335 . 1 238 bZIP Transcription Factor Family AT2G42380 51.1 5.3e-51 198.7
Lcy13g2085 . 37 386 bZIP Transcription Factor Family AT1G45249 53.8 1.2e-83 307.8
Lcy1g0729 . 1 367 bZIP Transcription Factor Family AT4G36730 50.8 9.1e-63 238.0
Lcy13g1614 . 108 437 bZIP Transcription Factor Family AT3G12250 80.0 1.1e-135 480.3
Lcy7g0710 . 24 356 bZIP Transcription Factor Family AT3G12250 76.0 3.1e-130 462.2
Lcy5g0911 . 315 757 bZIP Transcription Factor Family AT3G12250 59.1 2.7e-118 422.5
Lcy10g0967 . 134 466 bZIP Transcription Factor Family AT3G12250 69.7 4.7e-118 421.8
Lcy8g1992 . 205 485 bZIP Transcription Factor Family AT3G12250 57.7 1.8e-85 313.5
Lcy5g1196 . 183 467 bZIP Transcription Factor Family AT3G12250 57.3 8.9e-85 311.2
Lcy5g0638 . 216 487 bZIP Transcription Factor Family AT3G12250 58.0 7.8e-81 298.1
Lcy10g2336 . 185 483 bZIP Transcription Factor Family AT3G12250 52.8 4.9e-75 278.9
Lcy6g0977 . 77 356 bZIP Transcription Factor Family AT3G12250 55.2 3.2e-74 276.2
Lcy10g0967 . 15 466 bZIP Transcription Factor Family AT1G68640 62.6 7.5e-143 504.6
Lcy13g1614 . 102 437 bZIP Transcription Factor Family AT1G68640 65.7 7.3e-114 408.3
Lcy7g0710 . 21 356 bZIP Transcription Factor Family AT1G68640 64.0 2.7e-108 389.8
Lcy5g0911 . 313 757 bZIP Transcription Factor Family AT1G68640 52.0 4.8e-105 379.0
Lcy5g1196 . 188 467 bZIP Transcription Factor Family AT1G68640 56.6 2.1e-84 310.5
Lcy8g1992 . 207 485 bZIP Transcription Factor Family AT1G68640 57.0 3.9e-83 306.2
Lcy5g0638 . 216 487 bZIP Transcription Factor Family AT1G68640 55.8 7.2e-77 285.4
Lcy10g1347 . 12 321 bZIP Transcription Factor Family AT1G43700 53.7 9.0e-64 241.5
Lcy9g0965 . 12 294 bZIP Transcription Factor Family AT1G43700 51.8 6.4e-62 235.3
Lcy7g1073 . 100 240 bZIP Transcription Factor Family AT1G43700 59.6 2.7e-36 150.2
Lcy11g2026 . 11 419 bZIP Transcription Factor Family AT2G46270 50.7 5.9e-82 302.0
Lcy11g1261 . 49 307 bZIP Transcription Factor Family AT2G31370 72.7 8.5e-90 328.2
Lcy11g1258 . 43 344 bZIP Transcription Factor Family AT2G31370 63.5 5.2e-87 318.9
Lcy7g1073 . 25 250 bZIP Transcription Factor Family AT2G31370 51.6 1.5e-46 184.5
Lcy9g0965 . 138 286 bZIP Transcription Factor Family AT2G31370 64.7 1.2e-40 164.9
Lcy10g1638 . 17 294 bZIP Transcription Factor Family AT3G56850 56.0 3.3e-62 236.1
Lcy6g2255 . 33 344 bZIP Transcription Factor Family AT1G32150 65.7 6.3e-98 355.1
Lcy12g1977 . 1 402 bZIP Transcription Factor Family AT1G32150 53.6 8.3e-90 328.2
Lcy11g1261 . 10 307 bZIP Transcription Factor Family AT1G06070 70.1 1.3e-101 367.5
Lcy11g1258 . 10 344 bZIP Transcription Factor Family AT1G06070 63.0 1.5e-97 354.0
Lcy7g1073 . 13 250 bZIP Transcription Factor Family AT1G06070 50.8 1.9e-47 187.6
Lcy10g1347 . 141 297 bZIP Transcription Factor Family AT1G06070 62.7 1.2e-41 168.3
Lcy13g2085 . 37 386 bZIP Transcription Factor Family AT1G45249 53.8 1.2e-83 307.8
Lcy10g1638 . 6 295 bZIP Transcription Factor Family AT2G41070 50.3 4.1e-50 195.7
Lcy6g2255 . 1 342 bZIP Transcription Factor Family AT2G35530 69.3 7.6e-110 394.8
Lcy12g1977 . 1 402 bZIP Transcription Factor Family AT2G35530 54.9 2.1e-96 350.1
Lcy7g1073 . 4 346 bZIP Transcription Factor Family AT2G40620 57.6 3.1e-86 316.2
Lcy8g1689 . 58 388 bZIP Transcription Factor Family AT2G40620 51.0 3.4e-69 259.6
Lcy8g1257 . 55 287 bZIP Transcription Factor Family AT4G35040 61.3 2.0e-63 240.0
Lcy13g1614 . 108 437 bZIP Transcription Factor Family AT5G06950 79.2 2.1e-134 476.1
Lcy7g0710 . 24 356 bZIP Transcription Factor Family AT5G06950 76.6 7.4e-132 467.6
Lcy10g0967 . 134 466 bZIP Transcription Factor Family AT5G06950 70.6 1.9e-119 426.4
Lcy5g0911 . 315 757 bZIP Transcription Factor Family AT5G06950 58.2 3.6e-118 422.2
Lcy5g1196 . 183 467 bZIP Transcription Factor Family AT5G06950 57.3 8.1e-86 314.7
Lcy8g1992 . 205 485 bZIP Transcription Factor Family AT5G06950 57.0 1.8e-85 313.5
Lcy5g0638 . 216 487 bZIP Transcription Factor Family AT5G06950 58.8 2.4e-82 303.1
Lcy10g2336 . 195 483 bZIP Transcription Factor Family AT5G06950 53.9 7.6e-76 281.6
Lcy6g0977 . 77 356 bZIP Transcription Factor Family AT5G06950 54.5 7.1e-74 275.0
Lcy5g1196 . 181 466 bZIP Transcription Factor Family AT1G08320 75.2 3.0e-118 422.5
Lcy8g1992 . 203 484 bZIP Transcription Factor Family AT1G08320 73.0 2.4e-115 412.9
Lcy13g1614 . 152 436 bZIP Transcription Factor Family AT1G08320 63.2 6.4e-97 351.7
Lcy7g0710 . 68 355 bZIP Transcription Factor Family AT1G08320 60.4 3.7e-92 335.9
Lcy10g0967 . 172 465 bZIP Transcription Factor Family AT1G08320 58.2 1.3e-89 327.4
Lcy5g0638 . 216 487 bZIP Transcription Factor Family AT1G08320 58.8 6.2e-84 308.5
Lcy8g1257 . 55 316 bZIP Transcription Factor Family AT2G16770 58.6 5.9e-65 245.0
Lcy13g1614 . 128 437 bZIP Transcription Factor Family AT5G06960 79.4 4.9e-125 444.9
Lcy7g0710 . 56 356 bZIP Transcription Factor Family AT5G06960 76.7 1.8e-119 426.4
Lcy5g0911 . 336 757 bZIP Transcription Factor Family AT5G06960 56.3 7.8e-107 384.4
Lcy10g0967 . 160 466 bZIP Transcription Factor Family AT5G06960 67.8 6.6e-106 381.3
Lcy5g1196 . 178 467 bZIP Transcription Factor Family AT5G06960 56.8 5.4e-84 308.5
Lcy8g1992 . 205 485 bZIP Transcription Factor Family AT5G06960 56.0 5.4e-84 308.5
Lcy5g0638 . 216 487 bZIP Transcription Factor Family AT5G06960 59.3 4.8e-80 295.4
Lcy10g2336 . 185 483 bZIP Transcription Factor Family AT5G06960 52.4 8.7e-74 274.6
Lcy6g0977 . 52 356 bZIP Transcription Factor Family AT5G06960 51.8 6.2e-72 268.5
Lcy3g0949 . 1 600 bZIP Transcription Factor Family AT4G38900 54.3 2.0e-126 450.3
Lcy10g1347 . 93 282 bZIP Transcription Factor Family AT4G38900 54.9 4.7e-38 156.8
Lcy7g1073 . 125 239 bZIP Transcription Factor Family AT4G38900 76.5 1.5e-36 151.8
Lcy3g0949 . 2 497 bZIP Transcription Factor Family AT2G21230 51.2 1.7e-93 340.9
Lcy9g0965 . 102 283 bZIP Transcription Factor Family AT2G21230 55.7 2.4e-36 151.0
Lcy4g0522 . 1 251 bZIP Transcription Factor Family AT2G42380 56.9 7.1e-56 214.9
Lcy9g1335 . 1 238 bZIP Transcription Factor Family AT2G42380 51.1 5.3e-51 198.7
Lcy1g0729 . 1 367 bZIP Transcription Factor Family AT4G36730 50.8 9.1e-63 238.0
Lcy13g1614 . 108 437 bZIP Transcription Factor Family AT3G12250 80.0 1.1e-135 480.3
Lcy7g0710 . 24 356 bZIP Transcription Factor Family AT3G12250 76.0 3.1e-130 462.2
Lcy5g0911 . 315 757 bZIP Transcription Factor Family AT3G12250 59.1 2.7e-118 422.5
Lcy10g0967 . 134 466 bZIP Transcription Factor Family AT3G12250 69.7 4.7e-118 421.8
Lcy8g1992 . 205 485 bZIP Transcription Factor Family AT3G12250 57.7 1.8e-85 313.5
Lcy5g1196 . 183 467 bZIP Transcription Factor Family AT3G12250 57.3 8.9e-85 311.2
Lcy5g0638 . 216 487 bZIP Transcription Factor Family AT3G12250 58.0 7.8e-81 298.1
Lcy10g2336 . 185 483 bZIP Transcription Factor Family AT3G12250 52.8 4.9e-75 278.9
Lcy6g0977 . 77 356 bZIP Transcription Factor Family AT3G12250 55.2 3.2e-74 276.2
Lcy10g0967 . 15 466 bZIP Transcription Factor Family AT1G68640 62.6 7.5e-143 504.6
Lcy13g1614 . 102 437 bZIP Transcription Factor Family AT1G68640 65.7 7.3e-114 408.3
Lcy7g0710 . 21 356 bZIP Transcription Factor Family AT1G68640 64.0 2.7e-108 389.8
Lcy5g0911 . 313 757 bZIP Transcription Factor Family AT1G68640 52.0 4.8e-105 379.0
Lcy5g1196 . 188 467 bZIP Transcription Factor Family AT1G68640 56.6 2.1e-84 310.5
Lcy8g1992 . 207 485 bZIP Transcription Factor Family AT1G68640 57.0 3.9e-83 306.2
Lcy5g0638 . 216 487 bZIP Transcription Factor Family AT1G68640 55.8 7.2e-77 285.4
Lcy10g1347 . 12 321 bZIP Transcription Factor Family AT1G43700 53.7 9.0e-64 241.5
Lcy9g0965 . 12 294 bZIP Transcription Factor Family AT1G43700 51.8 6.4e-62 235.3
Lcy7g1073 . 100 240 bZIP Transcription Factor Family AT1G43700 59.6 2.7e-36 150.2
Lcy11g2026 . 11 419 bZIP Transcription Factor Family AT2G46270 50.7 5.9e-82 302.0
Lcy11g1261 . 49 307 bZIP Transcription Factor Family AT2G31370 72.7 8.5e-90 328.2
Lcy11g1258 . 43 344 bZIP Transcription Factor Family AT2G31370 63.5 5.2e-87 318.9
Lcy7g1073 . 25 250 bZIP Transcription Factor Family AT2G31370 51.6 1.5e-46 184.5
Lcy9g0965 . 138 286 bZIP Transcription Factor Family AT2G31370 64.7 1.2e-40 164.9
Lcy10g1638 . 17 294 bZIP Transcription Factor Family AT3G56850 56.0 3.3e-62 236.1
Lcy6g2255 . 33 344 bZIP Transcription Factor Family AT1G32150 65.7 6.3e-98 355.1
Lcy12g1977 . 1 402 bZIP Transcription Factor Family AT1G32150 53.6 8.3e-90 328.2
Lcy11g1261 . 10 307 bZIP Transcription Factor Family AT1G06070 70.1 1.3e-101 367.5
Lcy11g1258 . 10 344 bZIP Transcription Factor Family AT1G06070 63.0 1.5e-97 354.0
Lcy7g1073 . 13 250 bZIP Transcription Factor Family AT1G06070 50.8 1.9e-47 187.6
Lcy10g1347 . 141 297 bZIP Transcription Factor Family AT1G06070 62.7 1.2e-41 168.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001517 2 6 2 1 2 2 3 2 2 2 2 2 3 3 2 2 2 2 3 2 2 1 2 2 2 2 3 4 6 1 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19117 None None None None Lcy TF