Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1261 ATGGAGAAGGACAAACCCCAAAGCCATTCTGGTGGATTTCTACCCCCATCGAGTCGTTACTCAGGTCTCTCACCAACTGGGAGCAATTTCAATGGAAAATCTGAGGCAACGTCGTCTTCAATGTCGCTTCCTCCAATGGCTTCAAGTGCTAATTCCGATTCGAGTCAATATGGTCGTGGAATGTCTACCGATTCTAATCGGTTCAGCCATGATATTAGTCGGATGCCTGATAACCCGCCGAGAAATATTGGTCACAGACGTGCTCATTCAGAAATACTGACCCTTCCTGATGATATTTGTTTCGACAGTGACCTTGGTGTCATTGGCAGTGCTGATGGCCCTTCTCTTTCTGATGATACCGAGGAAGATTTGTTATCCATGTACCTCGACATGGACAAATTCAATTCTTCGACTGCTACCTCTGCAATACAAGTTGGTGAGTCATCTTCTGCTATGGTAGAAGCAAGATCAACTCCTACTTCAGCAATTGGTGCAGCAACTTCTAAAGACGATGCTTCCATTGGTTTGAAGGAGAGGCCAAGAGTTAGGCACCAGCATAGCCAGTCCATGGATGGCTTGACAACCATAAAGCCTGAGATGCTTGTCTCAGGATCTGAAGAAGTCTCTGCAGCTGATTCCAAGAAAGCCATGTCAGCTACAAAGCTTGCTGAGCTTGCACTAATTGACCCCAAACGTGCAAAGAGGATATGGGCAAATAGACAGTCAGCTGCTAGGTCAAAGGAAAGAAAGATGCGGTACATTGCTGAGCTTGAGCGGAAAGTTCAGACTCTGCAAACAGAGGCAACTTCTTTATCTGCTCAGTTAACCCTCTTACAGAGAGACACAAACGGTCTTACTGCTGAGAACAGTGAACTAAAGCTGCGGTTGCAGACAATGGAGCAGCAGGTTCACCTACAAGATGGTAAGGACCTCTATAATTTCATTTTTCATGTGACTGCACATTATGGTTGCCTTCTCTTAGTTTGCAGATGA 993 45.52 MEKDKPQSHSGGFLPPSSRYSGLSPTGSNFNGKSEATSSSMSLPPMASSANSDSSQYGRGMSTDSNRFSHDISRMPDNPPRNIGHRRAHSEILTLPDDICFDSDLGVIGSADGPSLSDDTEEDLLSMYLDMDKFNSSTATSAIQVGESSSAMVEARSTPTSAIGAATSKDDASIGLKERPRVRHQHSQSMDGLTTIKPEMLVSGSEEVSAADSKKAMSATKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDGKDLYNFIFHVTAHYGCLLLVCR 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 35823558 35829176 + Maker00005299 Lcy11g1261 647162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1261 330 MobiDBLite consensus disorder prediction 11 69 - -
Lcy11g1261 330 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 69 308 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lcy11g1261 330 MobiDBLite consensus disorder prediction 1 84 - -
Lcy11g1261 330 Pfam bZIP transcription factor 231 285 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g1261 330 SMART brlzneu 227 291 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g1261 330 SUPERFAMILY Leucine zipper domain 231 282 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g1261 330 Coils Coil 247 302 - -
Lcy11g1261 330 CDD bZIP_plant_RF2 232 281 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g1261 330 FunFam probable transcription factor PosF21 230 283 - -
Lcy11g1261 330 Gene3D - 230 282 - -
Lcy11g1261 330 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 229 292 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1261 Lcy-Chr11:35823558 Lcy7g1073 Lcy-Chr7:11487583 1.01E-45 dispersed
Lcy11g1258 Lcy-Chr11:35776007 Lcy11g1261 Lcy-Chr11:35823558 2.64E-190 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19117 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1261 - - - 0.0