Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy11g1261 | ATGGAGAAGGACAAACCCCAAAGCCATTCTGGTGGATTTCTACCCCCATCGAGTCGTTACTCAGGTCTCTCACCAACTGGGAGCAATTTCAATGGAAAATCTGAGGCAACGTCGTCTTCAATGTCGCTTCCTCCAATGGCTTCAAGTGCTAATTCCGATTCGAGTCAATATGGTCGTGGAATGTCTACCGATTCTAATCGGTTCAGCCATGATATTAGTCGGATGCCTGATAACCCGCCGAGAAATATTGGTCACAGACGTGCTCATTCAGAAATACTGACCCTTCCTGATGATATTTGTTTCGACAGTGACCTTGGTGTCATTGGCAGTGCTGATGGCCCTTCTCTTTCTGATGATACCGAGGAAGATTTGTTATCCATGTACCTCGACATGGACAAATTCAATTCTTCGACTGCTACCTCTGCAATACAAGTTGGTGAGTCATCTTCTGCTATGGTAGAAGCAAGATCAACTCCTACTTCAGCAATTGGTGCAGCAACTTCTAAAGACGATGCTTCCATTGGTTTGAAGGAGAGGCCAAGAGTTAGGCACCAGCATAGCCAGTCCATGGATGGCTTGACAACCATAAAGCCTGAGATGCTTGTCTCAGGATCTGAAGAAGTCTCTGCAGCTGATTCCAAGAAAGCCATGTCAGCTACAAAGCTTGCTGAGCTTGCACTAATTGACCCCAAACGTGCAAAGAGGATATGGGCAAATAGACAGTCAGCTGCTAGGTCAAAGGAAAGAAAGATGCGGTACATTGCTGAGCTTGAGCGGAAAGTTCAGACTCTGCAAACAGAGGCAACTTCTTTATCTGCTCAGTTAACCCTCTTACAGAGAGACACAAACGGTCTTACTGCTGAGAACAGTGAACTAAAGCTGCGGTTGCAGACAATGGAGCAGCAGGTTCACCTACAAGATGGTAAGGACCTCTATAATTTCATTTTTCATGTGACTGCACATTATGGTTGCCTTCTCTTAGTTTGCAGATGA | 993 | 45.52 | MEKDKPQSHSGGFLPPSSRYSGLSPTGSNFNGKSEATSSSMSLPPMASSANSDSSQYGRGMSTDSNRFSHDISRMPDNPPRNIGHRRAHSEILTLPDDICFDSDLGVIGSADGPSLSDDTEEDLLSMYLDMDKFNSSTATSAIQVGESSSAMVEARSTPTSAIGAATSKDDASIGLKERPRVRHQHSQSMDGLTTIKPEMLVSGSEEVSAADSKKAMSATKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDGKDLYNFIFHVTAHYGCLLLVCR | 330 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 35823558 | 35829176 | + | Maker00005299 | Lcy11g1261 | 647162 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy11g1261 | 330 | MobiDBLite | consensus disorder prediction | 11 | 69 | - | - | |
Lcy11g1261 | 330 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 69 | 308 | - | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Lcy11g1261 | 330 | MobiDBLite | consensus disorder prediction | 1 | 84 | - | - | |
Lcy11g1261 | 330 | Pfam | bZIP transcription factor | 231 | 285 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy11g1261 | 330 | SMART | brlzneu | 227 | 291 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy11g1261 | 330 | SUPERFAMILY | Leucine zipper domain | 231 | 282 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy11g1261 | 330 | Coils | Coil | 247 | 302 | - | - | |
Lcy11g1261 | 330 | CDD | bZIP_plant_RF2 | 232 | 281 | IPR044759 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy11g1261 | 330 | FunFam | probable transcription factor PosF21 | 230 | 283 | - | - | |
Lcy11g1261 | 330 | Gene3D | - | 230 | 282 | - | - | |
Lcy11g1261 | 330 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 229 | 292 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g1261 | Lcy-Chr11:35823558 | Lcy7g1073 | Lcy-Chr7:11487583 | 1.01E-45 | dispersed | |
Lcy11g1258 | Lcy-Chr11:35776007 | Lcy11g1261 | Lcy-Chr11:35823558 | 2.64E-190 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19117 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy11g1261 | - | - | - | 0.0 |