Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy11g1272 | ATGGAGAAGGAGTTCTTCATGAACGATGGATGCAGTTTTTATGGGATGGAAATCCAACAAAATGAGCTGAATTCAAGTGTGTTGTTCAATCCCAATTGGGAAAACTCGATGGATCAGAGCGATCTCTTTGAGTCTACTTTGAGCTCGATTGTGTCTTCTCCGGCGAATTCCCACGCCGGAACTGTCATCGGCGGCGGTGGCGGTGGTGACAATTTGATGATGCGAGAATTGATTGGAAGGCTTGGGAGCATTTGCAATTCTGGTGAGATTTCGCCTCATTCTTACATTGGTGGAACGAACAACAACAGTACCAACACTTCTTGTTACAATACGCCTTTGAATTCTCCACCGAAGCTCAATTTGTCGTCGATCATGGAGTCTCAGATGAGAGGGAATTTATCAGTCGGTGGCAATTTGATTCCTCATCATCAAAATCTGGCCCCATTTTCGGCTGATCCAGGTTTTGCTGAGAGGGCTGCGAGATTTTCTTGTTTCGGGAACAGGAATCTTGCGGTGAATGGGCAATTGGGTTCTAATGAAACTCAAGAATTGGGTAACAGATCAATGGCTGGAGCTGGAGTGGAATCTGGAAAGCTTTCTAGAGTTTCAAGTAACAAATCCTTCAATGTTGGTGGAATTGGATCTCAAATGGGCGCTCAGGAAGGCAACCAGAGCCCGGTGCAGAAGGGGAATTCAATGCCCAACAAGAAAGTACTGAACAGGTTTTCGAGGTCTTCGACCCCCGAAAATGCTGGTGATTCGCGGGAGGGATCTTCAGTTTCAGATCAGATTACAGGTGGGGAATTGGGTTTCAAAGGCAAAGCTGAAGTCACCACTAGGAAAAGGAAATCAGTTCACACTGGTGAAGCAAAAGATGTGAAGGCTGCAGGAGAGAACCATGAATTAAATGGAAAGAAAATCAAACCAGAGGAAGTTTCTAAGAAAGAGATGGATGCTGCAAAGGGGAAGGCAGAGGCAAAAGATGGCACAAAAGCTTCAGGGGATGCAAATCAGAAGCAAAACAATGATAATTCAAAGCCTCCAGAGCCTCCAAAGGATTATATCCATGTTAGAGCTAGAAGGGGTCAAGCCACAGATAGCCACAGTTTGGCTGAAAGAGTCCGACGAGAGAAAATCAGCAAACGGATGAAGTTTCTTCAAGATCTCGTCCCCGGTTGCAATAAGGTGCTTGGAATTTACAATTCTGCAGTAACTGGGAAGGCAGTCATGCTTGATGAAATTATAAACTATGTTCAATCTTTGCAACGCCAAGTTGAGTTTCTTTCAATGAAGTTGGCAACTGTCAATCCAAGAATGGATTTTAACATGGAGACCCTTTTGCCAAAGGATATCTTCAAAGGTCCCGGTTCGTCACCGCATACGATTTACCCTATAGATTCATCTGTGCCCACATTCGCATATGAATATCAATCCATGCACATGCCTCCTCTTCATAGTGGCATTTCTAATGGGACAGAGAAGCAATTCCCCGTCGCCTCAGCAAGCGATGTGATGCAAAGAAATCTAAGCGGGCAAATGCCAAGCGGGTACAGTGAAGTCGGGAACGGAATTCAGATTTCAAAGTTCTGGGAGGATGAACTCCACACTGTAGTTCAGATGGGTTATGGGCAAAACCAGCTACAGAATCCTAATGGTAAGATAGCCACAGAACTTATAGCTCTTTGGGTTTGA | 1692 | 44.86 | MEKEFFMNDGCSFYGMEIQQNELNSSVLFNPNWENSMDQSDLFESTLSSIVSSPANSHAGTVIGGGGGGDNLMMRELIGRLGSICNSGEISPHSYIGGTNNNSTNTSCYNTPLNSPPKLNLSSIMESQMRGNLSVGGNLIPHHQNLAPFSADPGFAERAARFSCFGNRNLAVNGQLGSNETQELGNRSMAGAGVESGKLSRVSSNKSFNVGGIGSQMGAQEGNQSPVQKGNSMPNKKVLNRFSRSSTPENAGDSREGSSVSDQITGGELGFKGKAEVTTRKRKSVHTGEAKDVKAAGENHELNGKKIKPEEVSKKEMDAAKGKAEAKDGTKASGDANQKQNNDNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISKRMKFLQDLVPGCNKVLGIYNSAVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDFNMETLLPKDIFKGPGSSPHTIYPIDSSVPTFAYEYQSMHMPPLHSGISNGTEKQFPVASASDVMQRNLSGQMPSGYSEVGNGIQISKFWEDELHTVVQMGYGQNQLQNPNGKIATELIALWV | 563 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 36003406 | 36006558 | + | Maker00005136 | Lcy11g1272 | 647173 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy11g1272 | 563 | MobiDBLite | consensus disorder prediction | 203 | 354 | - | - | |
Lcy11g1272 | 563 | Pfam | Helix-loop-helix DNA-binding domain | 367 | 422 | IPR011598 | GO:0046983(InterPro) | |
Lcy11g1272 | 563 | MobiDBLite | consensus disorder prediction | 274 | 332 | - | - | |
Lcy11g1272 | 563 | MobiDBLite | consensus disorder prediction | 333 | 347 | - | - | |
Lcy11g1272 | 563 | CDD | bHLH_AtBPE_like | 353 | 446 | - | - | |
Lcy11g1272 | 563 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 147 | 519 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Lcy11g1272 | 563 | FunFam | Basic helix-loop-helix transcription factor | 360 | 441 | - | - | |
Lcy11g1272 | 563 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 363 | 421 | IPR011598 | GO:0046983(InterPro) | |
Lcy11g1272 | 563 | SMART | finulus | 369 | 427 | IPR011598 | GO:0046983(InterPro) | |
Lcy11g1272 | 563 | MobiDBLite | consensus disorder prediction | 203 | 265 | - | - | |
Lcy11g1272 | 563 | Gene3D | - | 363 | 433 | IPR036638 | GO:0046983(InterPro) | |
Lcy11g1272 | 563 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 361 | 441 | IPR036638 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g1272 | Lcy-Chr11:36003406 | Lcy3g1332 | Lcy-Chr3:39631989 | 7.35E-72 | dispersed | |
Lcy11g1272 | Lcy-Chr11:36003406 | Lcy3g1006 | Lcy-Chr3:33992068 | 2.43E-40 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19118 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy11g1272 | - | - | - | 0.0 |