Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1272 ATGGAGAAGGAGTTCTTCATGAACGATGGATGCAGTTTTTATGGGATGGAAATCCAACAAAATGAGCTGAATTCAAGTGTGTTGTTCAATCCCAATTGGGAAAACTCGATGGATCAGAGCGATCTCTTTGAGTCTACTTTGAGCTCGATTGTGTCTTCTCCGGCGAATTCCCACGCCGGAACTGTCATCGGCGGCGGTGGCGGTGGTGACAATTTGATGATGCGAGAATTGATTGGAAGGCTTGGGAGCATTTGCAATTCTGGTGAGATTTCGCCTCATTCTTACATTGGTGGAACGAACAACAACAGTACCAACACTTCTTGTTACAATACGCCTTTGAATTCTCCACCGAAGCTCAATTTGTCGTCGATCATGGAGTCTCAGATGAGAGGGAATTTATCAGTCGGTGGCAATTTGATTCCTCATCATCAAAATCTGGCCCCATTTTCGGCTGATCCAGGTTTTGCTGAGAGGGCTGCGAGATTTTCTTGTTTCGGGAACAGGAATCTTGCGGTGAATGGGCAATTGGGTTCTAATGAAACTCAAGAATTGGGTAACAGATCAATGGCTGGAGCTGGAGTGGAATCTGGAAAGCTTTCTAGAGTTTCAAGTAACAAATCCTTCAATGTTGGTGGAATTGGATCTCAAATGGGCGCTCAGGAAGGCAACCAGAGCCCGGTGCAGAAGGGGAATTCAATGCCCAACAAGAAAGTACTGAACAGGTTTTCGAGGTCTTCGACCCCCGAAAATGCTGGTGATTCGCGGGAGGGATCTTCAGTTTCAGATCAGATTACAGGTGGGGAATTGGGTTTCAAAGGCAAAGCTGAAGTCACCACTAGGAAAAGGAAATCAGTTCACACTGGTGAAGCAAAAGATGTGAAGGCTGCAGGAGAGAACCATGAATTAAATGGAAAGAAAATCAAACCAGAGGAAGTTTCTAAGAAAGAGATGGATGCTGCAAAGGGGAAGGCAGAGGCAAAAGATGGCACAAAAGCTTCAGGGGATGCAAATCAGAAGCAAAACAATGATAATTCAAAGCCTCCAGAGCCTCCAAAGGATTATATCCATGTTAGAGCTAGAAGGGGTCAAGCCACAGATAGCCACAGTTTGGCTGAAAGAGTCCGACGAGAGAAAATCAGCAAACGGATGAAGTTTCTTCAAGATCTCGTCCCCGGTTGCAATAAGGTGCTTGGAATTTACAATTCTGCAGTAACTGGGAAGGCAGTCATGCTTGATGAAATTATAAACTATGTTCAATCTTTGCAACGCCAAGTTGAGTTTCTTTCAATGAAGTTGGCAACTGTCAATCCAAGAATGGATTTTAACATGGAGACCCTTTTGCCAAAGGATATCTTCAAAGGTCCCGGTTCGTCACCGCATACGATTTACCCTATAGATTCATCTGTGCCCACATTCGCATATGAATATCAATCCATGCACATGCCTCCTCTTCATAGTGGCATTTCTAATGGGACAGAGAAGCAATTCCCCGTCGCCTCAGCAAGCGATGTGATGCAAAGAAATCTAAGCGGGCAAATGCCAAGCGGGTACAGTGAAGTCGGGAACGGAATTCAGATTTCAAAGTTCTGGGAGGATGAACTCCACACTGTAGTTCAGATGGGTTATGGGCAAAACCAGCTACAGAATCCTAATGGTAAGATAGCCACAGAACTTATAGCTCTTTGGGTTTGA 1692 44.86 MEKEFFMNDGCSFYGMEIQQNELNSSVLFNPNWENSMDQSDLFESTLSSIVSSPANSHAGTVIGGGGGGDNLMMRELIGRLGSICNSGEISPHSYIGGTNNNSTNTSCYNTPLNSPPKLNLSSIMESQMRGNLSVGGNLIPHHQNLAPFSADPGFAERAARFSCFGNRNLAVNGQLGSNETQELGNRSMAGAGVESGKLSRVSSNKSFNVGGIGSQMGAQEGNQSPVQKGNSMPNKKVLNRFSRSSTPENAGDSREGSSVSDQITGGELGFKGKAEVTTRKRKSVHTGEAKDVKAAGENHELNGKKIKPEEVSKKEMDAAKGKAEAKDGTKASGDANQKQNNDNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISKRMKFLQDLVPGCNKVLGIYNSAVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDFNMETLLPKDIFKGPGSSPHTIYPIDSSVPTFAYEYQSMHMPPLHSGISNGTEKQFPVASASDVMQRNLSGQMPSGYSEVGNGIQISKFWEDELHTVVQMGYGQNQLQNPNGKIATELIALWV 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 36003406 36006558 + Maker00005136 Lcy11g1272 647173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1272 563 MobiDBLite consensus disorder prediction 203 354 - -
Lcy11g1272 563 Pfam Helix-loop-helix DNA-binding domain 367 422 IPR011598 GO:0046983(InterPro)
Lcy11g1272 563 MobiDBLite consensus disorder prediction 274 332 - -
Lcy11g1272 563 MobiDBLite consensus disorder prediction 333 347 - -
Lcy11g1272 563 CDD bHLH_AtBPE_like 353 446 - -
Lcy11g1272 563 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 147 519 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Lcy11g1272 563 FunFam Basic helix-loop-helix transcription factor 360 441 - -
Lcy11g1272 563 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 363 421 IPR011598 GO:0046983(InterPro)
Lcy11g1272 563 SMART finulus 369 427 IPR011598 GO:0046983(InterPro)
Lcy11g1272 563 MobiDBLite consensus disorder prediction 203 265 - -
Lcy11g1272 563 Gene3D - 363 433 IPR036638 GO:0046983(InterPro)
Lcy11g1272 563 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 361 441 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1272 Lcy-Chr11:36003406 Lcy3g1332 Lcy-Chr3:39631989 7.35E-72 dispersed
Lcy11g1272 Lcy-Chr11:36003406 Lcy3g1006 Lcy-Chr3:33992068 2.43E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19118 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1272 - - - 0.0